View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2505_high_28 (Length: 239)

Name: NF2505_high_28
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2505_high_28
NF2505_high_28
[»] chr3 (20 HSPs)
chr3 (1-126)||(47570675-47570800)
chr3 (123-222)||(49486823-49486922)
chr3 (123-218)||(15752602-15752697)
chr3 (123-218)||(2978338-2978433)
chr3 (123-218)||(21883385-21883480)
chr3 (124-218)||(21477454-21477547)
chr3 (162-222)||(49491320-49491380)
chr3 (162-222)||(21473104-21473164)
chr3 (159-218)||(21453157-21453216)
chr3 (160-218)||(21458332-21458390)
chr3 (161-218)||(15758395-15758452)
chr3 (162-218)||(2982282-2982338)
chr3 (162-218)||(21877164-21877220)
chr3 (123-197)||(3110634-3110708)
chr3 (143-197)||(9724748-9724802)
chr3 (123-222)||(13980756-13980855)
chr3 (143-197)||(2168776-2168830)
chr3 (143-197)||(13990812-13990866)
chr3 (143-197)||(23344356-23344410)
chr3 (143-197)||(40800763-40800817)
[»] scaffold0014 (2 HSPs)
scaffold0014 (123-222)||(111836-111935)
scaffold0014 (162-222)||(106062-106122)
[»] chr5 (10 HSPs)
chr5 (123-218)||(23053482-23053577)
chr5 (123-222)||(35264639-35264738)
chr5 (123-218)||(16675525-16675620)
chr5 (123-218)||(21171290-21171385)
chr5 (123-218)||(25365497-25365592)
chr5 (157-222)||(35270380-35270445)
chr5 (162-218)||(23059057-23059113)
chr5 (160-218)||(21178153-21178211)
chr5 (162-218)||(39654030-39654086)
chr5 (143-197)||(30957722-30957776)
[»] chr2 (16 HSPs)
chr2 (123-218)||(19437640-19437735)
chr2 (123-218)||(24053391-24053486)
chr2 (123-218)||(25445162-25445256)
chr2 (123-218)||(43287496-43287591)
chr2 (162-218)||(19443215-19443271)
chr2 (162-218)||(25454820-25454876)
chr2 (162-218)||(43293241-43293297)
chr2 (160-218)||(24056727-24056784)
chr2 (162-199)||(31433045-31433082)
chr2 (162-215)||(31437151-31437204)
chr2 (123-178)||(16443472-16443527)
chr2 (123-189)||(7910096-7910162)
chr2 (143-197)||(22430328-22430382)
chr2 (143-197)||(22435922-22435976)
chr2 (143-197)||(43776971-43777025)
chr2 (123-175)||(25231944-25231996)
[»] chr4 (29 HSPs)
chr4 (123-218)||(12659294-12659389)
chr4 (123-218)||(16325821-16325916)
chr4 (123-218)||(30673802-30673897)
chr4 (123-221)||(1874092-1874190)
chr4 (123-223)||(23200487-23200587)
chr4 (123-218)||(12435449-12435544)
chr4 (123-218)||(29333598-29333693)
chr4 (123-218)||(42411068-42411163)
chr4 (133-223)||(25687656-25687746)
chr4 (123-218)||(910949-911044)
chr4 (160-222)||(18890000-18890062)
chr4 (162-222)||(1913832-1913892)
chr4 (162-218)||(30679895-30679951)
chr4 (124-218)||(12428986-12429080)
chr4 (161-223)||(23187962-23188024)
chr4 (162-218)||(16334865-16334921)
chr4 (162-218)||(42404643-42404699)
chr4 (164-223)||(25697424-25697483)
chr4 (123-218)||(42119839-42119934)
chr4 (162-215)||(55325479-55325532)
chr4 (162-218)||(917391-917447)
chr4 (164-218)||(12439395-12439449)
chr4 (162-216)||(48305445-48305499)
chr4 (134-205)||(4393869-4393940)
chr4 (162-221)||(33360282-33360341)
chr4 (143-197)||(20192717-20192771)
chr4 (143-197)||(53982075-53982129)
chr4 (166-218)||(12665804-12665859)
chr4 (123-215)||(19581996-19582088)
[»] chr1 (19 HSPs)
chr1 (123-218)||(18535082-18535177)
chr1 (123-218)||(31093050-31093145)
chr1 (123-218)||(37356836-37356931)
chr1 (123-218)||(11660138-11660233)
chr1 (123-218)||(28519236-28519331)
chr1 (123-218)||(38991060-38991155)
chr1 (162-218)||(18540808-18540864)
chr1 (162-218)||(31099656-31099712)
chr1 (162-218)||(35625355-35625411)
chr1 (162-218)||(38984912-38984968)
chr1 (160-218)||(37365254-37365312)
chr1 (162-218)||(27347270-27347326)
chr1 (162-218)||(7876091-7876147)
chr1 (162-218)||(11654020-11654076)
chr1 (162-222)||(38736039-38736099)
chr1 (160-218)||(28512810-28512866)
chr1 (162-199)||(39492740-39492777)
chr1 (143-197)||(33493062-33493116)
chr1 (149-197)||(15716610-15716658)
[»] chr7 (16 HSPs)
chr7 (123-215)||(8248071-8248163)
chr7 (123-218)||(340396-340491)
chr7 (160-218)||(22822535-22822593)
chr7 (123-218)||(29185487-29185579)
chr7 (162-218)||(22826840-22826896)
chr7 (162-215)||(8242541-8242594)
chr7 (162-218)||(29176544-29176600)
chr7 (162-218)||(346630-346686)
chr7 (123-199)||(25830510-25830585)
chr7 (123-222)||(25499014-25499113)
chr7 (162-218)||(2068826-2068882)
chr7 (123-222)||(557972-558071)
chr7 (123-197)||(16648383-16648457)
chr7 (123-197)||(17622744-17622818)
chr7 (144-197)||(42208874-42208927)
chr7 (149-197)||(42162380-42162428)
[»] scaffold0102 (1 HSPs)
scaffold0102 (123-218)||(13986-14081)
[»] chr8 (14 HSPs)
chr8 (123-218)||(30714318-30714413)
chr8 (123-218)||(30722095-30722190)
chr8 (123-218)||(27679727-27679822)
chr8 (123-218)||(37209673-37209768)
chr8 (123-218)||(21247637-21247732)
chr8 (162-218)||(30727703-30727759)
chr8 (124-218)||(26196858-26196952)
chr8 (160-218)||(37204233-37204291)
chr8 (162-218)||(27683509-27683565)
chr8 (162-218)||(21241172-21241228)
chr8 (162-199)||(26197052-26197089)
chr8 (171-222)||(24042953-24043004)
chr8 (123-189)||(12756295-12756361)
chr8 (149-197)||(41048845-41048893)
[»] chr6 (6 HSPs)
chr6 (123-218)||(23427443-23427538)
chr6 (162-218)||(18738573-18738629)
chr6 (162-218)||(23421636-23421692)
chr6 (162-199)||(33661015-33661052)
chr6 (123-222)||(6933000-6933099)
chr6 (143-197)||(14855917-14855971)
[»] scaffold0079 (1 HSPs)
scaffold0079 (162-218)||(57939-57995)
[»] scaffold0591 (1 HSPs)
scaffold0591 (162-218)||(9323-9379)
[»] scaffold0258 (1 HSPs)
scaffold0258 (164-199)||(6400-6435)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-197)||(345796-345850)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 47570675 - 47570800
Alignment:
1 ttccaatctcatagtttctttcactttcataaaagaatgttcaaaattttatcaatgttaattatttaacatatattttcgttgtgcatgattaatgtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47570675 ttccaatctcatagtttctttcactttcataaaagaatgttcaaaattttatcaatgttaattatttaacatatattttcgttgtgcatgattaatgtgg 47570774  T
101 actcaagagataatgaatttaattta 126  Q
    ||||||||||||||||||||||||||    
47570775 actcaagagataatgaatttaattta 47570800  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 49486922 - 49486823
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49486922 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 49486823  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 15752697 - 15752602
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
15752697 tttaatgaggcatatcttcaatggacatccaagggggaatgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 15752602  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 2978433 - 2978338
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
2978433 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatacta 2978338  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 21883385 - 21883480
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
21883385 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatacta 21883480  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 21477454 - 21477547
Alignment:
124 ttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
21477454 ttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagc-aatgtgttattgggccatacta 21477547  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 49491380 - 49491320
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49491380 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 49491320  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 21473104 - 21473164
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
21473104 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattag 21473164  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 21453157 - 21453216
Alignment:
159 tagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
21453157 tagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 21453216  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 21458332 - 21458390
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
21458332 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 21458390  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 15758452 - 15758395
Alignment:
161 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
15758452 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 15758395  T

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Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 2982338 - 2982282
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
2982338 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggctatacta 2982282  T

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Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 21877164 - 21877220
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
21877164 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 21877220  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 3110708 - 3110634
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||||||| |||||||   ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
3110708 tttaatgaggcatatctgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 3110634  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 9724802 - 9724748
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||||    
9724802 atggacatccaagggggagtgttatgaatattactagtggatgtccatatagcaa 9724748  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 13980855 - 13980756
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| || ||||| ||||||||   |||||||| |||||||  |||||||||| | |||| || || |||| |||| |||||||||||    
13980855 tttaatgaggcatatcctcgatggacatccaaggaagagtgttatgaatattataagtggatgtctatataggaattgggttattgggtcatactattag 13980756  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 2168830 - 2168776
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
2168830 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 2168776  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 13990812 - 13990866
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
13990812 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 13990866  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 23344356 - 23344410
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
23344356 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 23344410  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 40800817 - 40800763
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
40800817 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 40800763  T

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Target: scaffold0014 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 111836 - 111935
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
111836 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 111935  T

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Target: scaffold0014; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 106062 - 106122
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||    
106062 tgttataaatattaacagcggatgtccaaatagcaaatgtgttagtgggctatactattag 106122  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 23053577 - 23053482
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23053577 tttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 23053482  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 35264738 - 35264639
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35264738 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 35264639  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 16675525 - 16675620
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
16675525 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatacta 16675620  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 21171385 - 21171290
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
21171385 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatacta 21171290  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 25365592 - 25365497
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
25365592 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatacta 25365497  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 35270445 - 35270380
Alignment:
157 ggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35270445 ggtactgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 35270380  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 23059113 - 23059057
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23059113 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 23059057  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21178211 - 21178153
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
21178211 agtgttataaatattaatagtggatgttcaaatggcaaatgtgttagtgggccatacta 21178153  T

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Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 39654086 - 39654030
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
39654086 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtggaccatacta 39654030  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 30957776 - 30957722
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
30957776 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 30957722  T

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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 19437735 - 19437640
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19437735 tttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 19437640  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 24053486 - 24053391
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
24053486 tttaatgaggcatatcttcaatggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 24053391  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 25445256 - 25445162
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
25445256 tttaatgaggcatatcctcaatggacatctaagggg-agtgttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatacta 25445162  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 43287591 - 43287496
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||| | |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||    
43287591 tttaatgaggcatatcctcaatgaacatccaaggggaagtgttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatacta 43287496  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 19443271 - 19443215
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19443271 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 19443215  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 25454876 - 25454820
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25454876 tgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatacta 25454820  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 43293297 - 43293241
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
43293297 tgttataaacattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 43293241  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 24056784 - 24056727
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
24056784 agtgttataaatattaatagtggatgtccagatagcaaatgtgtta-ttggccatacta 24056727  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 31433045 - 31433082
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||    
31433045 tgttataaatattaatagtggatgtccaaatagcaaat 31433082  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 31437151 - 31437204
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 215  Q
    |||||||||||||||||||||||||||||| | |||||| |||| ||| |||||    
31437151 tgttataaatattaatagtggatgtccaaacaacaaatgagttaatggaccata 31437204  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 16443527 - 16443472
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaata 178  Q
    ||||||||||||||||||  ||||| |||||||||| |||||||| |||| |||||    
16443527 tttaatgagacatatctttcatggacatccaagggggagtgttatgaataataata 16443472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 7910162 - 7910096
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtcca 189  Q
    ||||||||||||||||    ||||| |||||||||| |||||||| |||||||  ||||||||||||    
7910162 tttaatgagacatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 7910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 22430328 - 22430382
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
22430328 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 22430382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 22435922 - 22435976
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
22435922 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 22435976  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 43776971 - 43777025
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
43776971 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 43777025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 25231944 - 25231996
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatatta 175  Q
    ||||||||| ||||||||  |||||||||||||||| | |||||| |||||||    
25231944 tttaatgaggcatatctttgatggatatccaagggggaatgttatgaatatta 25231996  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 12659389 - 12659294
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
12659389 tttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 12659294  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 16325916 - 16325821
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
16325916 tttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 16325821  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 30673897 - 30673802
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30673897 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 30673802  T

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Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 1874190 - 1874092
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactatta 221  Q
    ||||| ||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1874190 tttaacgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactatta 1874092  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 23200487 - 23200587
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
23200487 tttaatgaggcatatcctcaatggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactag 23200586  T
223 t 223  Q
    |    
23200587 t 23200587  T

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Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 12435544 - 12435449
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
12435544 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 12435449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 29333598 - 29333693
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
29333598 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 29333693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 42411068 - 42411163
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
42411068 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 42411163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 25687746 - 25687656
Alignment:
133 catatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattagt 223  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
25687746 catatcctcaatgaacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagt 25687656  T

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Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 911044 - 910949
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
911044 tttaatgaggcatatcctcgatggacatccaagaggaagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 910949  T

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Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 18890000 - 18890062
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18890000 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 18890062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 1913892 - 1913832
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1913892 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 1913832  T

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Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 30679951 - 30679895
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30679951 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 30679895  T

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Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 12429080 - 12428986
Alignment:
124 ttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||| |||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||  |||  ||||||||||||    
12429080 ttaatgaggcatatcctcaatggacatccaaggaggagtgttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatacta 12428986  T

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Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 23187962 - 23188024
Alignment:
161 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattagt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
23187962 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtggaccatactactagt 23188024  T

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Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 16334921 - 16334865
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
16334921 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 16334865  T

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Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 42404643 - 42404699
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
42404643 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 42404699  T

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Target: chr4; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 25697483 - 25697424
Alignment:
164 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattagt 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
25697483 ttataaatattaatagtggatatccaaatagcaaatgtgttagtgggccatactactagt 25697424  T

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Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 42119934 - 42119839
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| ||||||    ||||||||  | |||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||    
42119934 tttaatgaggcatatcctcaatgagcttccaagggagaatgttataaatattaatagtggatgtccaaatagcaaatggattaatgggtcatacta 42119839  T

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Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 55325479 - 55325532
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 215  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
55325479 tgttataaatattaataatagatgtccaaatagcaaatgtgttagtgggtcata 55325532  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 917447 - 917391
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||    
917447 tgttataaatattaatattggatgtctaaatagcaaatatgttagtgggctatacta 917391  T

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Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 12439449 - 12439395
Alignment:
164 ttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||||||||||||||||  |||  ||||||||||||    
12439449 ttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatacta 12439395  T

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Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 48305499 - 48305445
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatac 216  Q
    ||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||    
48305499 tgttataaatattaaaagtggatgtccaaatagcaaacgcgttaatgggccatac 48305445  T

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Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 4393940 - 4393869
Alignment:
134 atatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgtta 205  Q
    ||||| || ||||| |||||| ||  |||||||||||||||||||||||||||| ||||| |||||| ||||    
4393940 atatcctcgatggacatccaatggagagtgttataaatattaatagtggatgtctaaataacaaatgggtta 4393869  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 33360341 - 33360282
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactatta 221  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||| | | |||||||||    
33360341 tgttataaatattaagagtgaatgtacaaatagcaaatgtgttagttgactatactatta 33360282  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 20192771 - 20192717
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
20192771 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 20192717  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 53982075 - 53982129
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
53982075 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 53982129  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 12665859 - 12665804
Alignment:
166 ataaatattaatagtggatgt---ccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||   |||||||  |||||||||| ||||||||||||    
12665859 ataaatattaatagtggatgttgtccaaataataaatgtgttattgggccatacta 12665804  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 19581996 - 19582088
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 215  Q
    ||||||||||||||||||  ||||| ||| |||| | |||||||| ||| |||  |||||||||||| ||| ||| || |||| || ||||||    
19581996 tttaatgagacatatctttgatggacatctaaggaggagtgttatgaattttataagtggatgtccatatatcaattgggttattgagccata 19582088  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 18535177 - 18535082
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18535177 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 18535082  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 31093145 - 31093050
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31093145 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 31093050  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 37356931 - 37356836
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
37356931 tttaatgaggcatatcttcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 37356836  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 11660138 - 11660233
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
11660138 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaagtaacaaatgtgttagtgggccatacta 11660233  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 28519236 - 28519331
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
28519236 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 28519331  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 38991060 - 38991155
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
38991060 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 38991155  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 18540864 - 18540808
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18540864 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 18540808  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 31099712 - 31099656
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31099712 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 31099656  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 35625411 - 35625355
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
35625411 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 35625355  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 38984912 - 38984968
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
38984912 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 38984968  T

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Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 37365312 - 37365254
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
37365312 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttattggaccatacta 37365254  T

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Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 27347326 - 27347270
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
27347326 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgagccatacta 27347270  T

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Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 7876091 - 7876147
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
7876091 tgttataaatattaatagtgaatgtccaaataacaaatgtgttagtggaccatacta 7876147  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 11654020 - 11654076
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||    
11654020 tgttataaatattaatagtggatatccaaatagcaaatgtgttagtggatcatacta 11654076  T

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Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 38736039 - 38736099
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||    
38736039 tgttataaatattaatagtggttgtccaaatagaaaatatgttattgggccatactattag 38736099  T

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Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 28512810 - 28512866
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||    
28512810 agtgttataaatattaatattggatgtccaa--agcaaatgtgttagtgggccatacta 28512866  T

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Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 39492740 - 39492777
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||    
39492740 tgttataaatattaatagtggatgtccaaatagcaaat 39492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 33493116 - 33493062
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
33493116 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 33493062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 15716610 - 15716658
Alignment:
149 atccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    |||||||||| |||||||| |||||||  |||||||||||| |||||||    
15716610 atccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 15716658  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 8248071 - 8248163
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 215  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8248071 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 8248163  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 340491 - 340396
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||    
340491 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatacta 340396  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 22822535 - 22822593
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
22822535 agtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 22822593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 29185487 - 29185579
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||   |||||||| ||||||||||||||| |||||||||||||||||||||||    
29185487 tttaatgaggcatatcctcgatggacatccaagggggagtgttat---tattaatattggatgtccaaatagaaaatgtgttagtgggccatacta 29185579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 22826840 - 22826896
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
22826840 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 22826896  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 8242541 - 8242594
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
8242541 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggtcata 8242594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 29176544 - 29176600
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
29176544 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggtcatacta 29176600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 346686 - 346630
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||    
346686 tgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatacta 346630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 25830585 - 25830510
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||| ||| |||||| || ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
25830585 tttaacgaggcatatcctcgatggacattcaagggg-agtgttataaatattaatagtggatgtccaaatagcaaat 25830510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 25499014 - 25499113
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| || ||||| |||||||||| |||||||| |||||||  |||||||||||| ||||||| |  |||| |||| |||||||||||    
25499014 tttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatattataagtggatgtccatatagcaattaggttattgggtcatactattag 25499113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 2068882 - 2068826
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||    
2068882 tgttataaatattaatagtggatgtccaaatagcaaatgagttaataggctatacta 2068826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 558071 - 557972
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| |||||| || ||||| |||||||||| |||||||| |||||||  |||||||||| | ||| ||| |  |||| |||| |||||||||||    
558071 tttaatgaggcatatcctcgatggacatccaagggggagtgttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattag 557972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 16648383 - 16648457
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||||||||||||||   |||||| |||||||||| | |||||| |||||||  |||||||||||| |||||||    
16648383 tttaatgagacatatccgaaatggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaa 16648457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 17622744 - 17622818
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||||||||||||||   |||||| |||||||||| | |||||| |||||||  |||||||||||| |||||||    
17622744 tttaatgagacatatccgaaatggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaa 17622818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 42208874 - 42208927
Alignment:
144 tggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    |||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
42208874 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 42208927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 42162428 - 42162380
Alignment:
149 atccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    |||||||||| |||||||| |||||||  |||||||||||| |||||||    
42162428 atccaaggggaagtgttatgaatattacaagtggatgtccatatagcaa 42162380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 13986 - 14081
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
13986 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgagccatacta 14081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 30714413 - 30714318
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
30714413 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatacta 30714318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 30722190 - 30722095
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
30722190 tttaatgaggcatatcctcaatggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatacta 30722095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 27679822 - 27679727
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
27679822 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 27679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 37209673 - 37209768
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
37209673 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 37209768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 21247637 - 21247732
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
21247637 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatacta 21247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 30727759 - 30727703
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30727759 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 30727703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 26196858 - 26196952
Alignment:
124 ttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||| |||||||| || |||||||  |||||||||||||||||||||||||| ||||||||||||  |||  ||||||||||||    
26196858 ttaatgagacatatcctcaatggacattcaagggggggtgttataaatattaatagtggatgttcaaatagcaaataggtttatgggccatacta 26196952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 37204233 - 37204291
Alignment:
160 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
37204233 agtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 37204291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 27683565 - 27683509
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
27683565 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 27683509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 21241172 - 21241228
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
21241172 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatacta 21241228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 26197089 - 26197052
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||    
26197089 tgttataaatattaatagtggatgtccaaatagcaaat 26197052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 24043004 - 24042953
Alignment:
171 tattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||| |||| |||||||||| ||||||||||| ||||||||| ||||||    
24043004 tattaattgtgggtgtccaaataacaaatgtgttaatgggccataatattag 24042953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 12756361 - 12756295
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtcca 189  Q
    ||||||||||||||||    ||||| |||||||||| |||||||| |||||||  ||||||||||||    
12756361 tttaatgagacatatccgagatggacatccaagggggagtgttatgaatattacaagtggatgtcca 12756295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 41048845 - 41048893
Alignment:
149 atccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    |||||||||| |||||||| |||||||  |||||||||||| |||||||    
41048845 atccaaggggaagtgttatgaatattacaagtggatgtccatatagcaa 41048893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 23427443 - 23427538
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
23427443 tttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggaccatacta 23427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 18738573 - 18738629
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18738573 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 18738629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 23421636 - 23421692
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||    
23421636 tgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggactatacta 23421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 33661052 - 33661015
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||    
33661052 tgttataaatattaatagtggatgtccaaatagcaaat 33661015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 6933000 - 6933099
Alignment:
123 tttaatgagacatatcttcaatggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattag 222  Q
    ||||||||| ||||||||| | ||| |||||||| |  ||||||| |||||||  |||||||||||| ||||||| || |||| |||| |||||| ||||    
6933000 tttaatgaggcatatcttcgacggacatccaaggagctgtgttatgaatattataagtggatgtccatatagcaattgggttattgggtcatactgttag 6933099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 14855917 - 14855971
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
14855917 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 14855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 57939 - 57995
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
57939 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatacta 57995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 9323 - 9379
Alignment:
162 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatacta 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
9323 tgttataaatattaatagtggatgtccaaatagcaaatgtattattgggccatacta 9379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 6435 - 6400
Alignment:
164 ttataaatattaatagtggatgtccaaatagcaaat 199  Q
    ||||||||||||| ||||||||||||||||||||||    
6435 ttataaatattaacagtggatgtccaaatagcaaat 6400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 345850 - 345796
Alignment:
143 atggatatccaaggggtagtgttataaatattaatagtggatgtccaaatagcaa 197  Q
    ||||| |||||||||| |||||||| |||||||  |||||||||||| |||||||    
345850 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaa 345796  T

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