View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_29 (Length: 239)
Name: NF2505_high_29
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3419557 - 3419739
Alignment:
| Q |
1 |
ccagaaaacacatctcattgtcgttgtcataattggggaccacattatctgcattctta-tattattaataaaaatggcatttacttgattattttggtt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
3419557 |
ccagaaaacacatctcattgtcgttgtcataattggggaccacattatctgcattcttattattattaatataaatggcatttacttgattattttggtt |
3419656 |
T |
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| Q |
100 |
attctct--nnnnnnnnntgattattttggttacgttacttaattaaataaaaaagaccgcaacaccctatacttttctaaca |
180 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3419657 |
attctctcaaaaaaaaattgattattttggttacgttacttaattaaataaaaaagaccgcaacaccctatacttttctaaca |
3419739 |
T |
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