View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2505_high_3 (Length: 524)

Name: NF2505_high_3
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2505_high_3
NF2505_high_3
[»] chr6 (12 HSPs)
chr6 (18-455)||(1904004-1904436)
chr6 (18-455)||(1908237-1908669)
chr6 (19-172)||(1898800-1898953)
chr6 (19-172)||(1888238-1888391)
chr6 (55-170)||(1893124-1893239)
chr6 (52-171)||(1880971-1881090)
chr6 (52-171)||(1914151-1914270)
chr6 (366-454)||(1899206-1899295)
chr6 (328-403)||(1899119-1899195)
chr6 (79-154)||(1919164-1919239)
chr6 (485-513)||(1904486-1904514)
chr6 (485-513)||(1908719-1908747)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 1904004 - 1904436
Alignment:
Q  18 gataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  1904004 gataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttgggt 1904103  T
Q  118 gttatgttccttggtgatactcttcatgttggaaggtatggttaattgaattttttgctt--------------gaaatgaaacattaggaagcaaatat 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||              ||||||||||||||||||||||||||    
T  1904104 gttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttgcttgaaatgaaacattaggaagcaaatat 1904203  T
Q  204 acaaagatcccaccatgttggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgataaaactcaattgaaccgataatgattc 303  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||    
T  1904204 acaaagatcccaccatgtaggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgat-------------------aatgattc 1904284  T
Q  304 gtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaaaaaccgaactgattttttgtgga 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1904285 gtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaaaaaccaaactgattttttgtgga 1904384  T
Q  404 ccgacatgtacgaaattgctatcatcaactaataataagggcttttgaaagc 455  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1904385 ccgacatgtacgaaattgctatcatcaattaataataagggcttttgaaagc 1904436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 1908237 - 1908669
Alignment:
Q  18 gataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  1908237 gataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttgggt 1908336  T
Q  118 gttatgttccttggtgatactcttcatgttggaaggtatggttaattgaattttttgctt--------------gaaatgaaacattaggaagcaaatat 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||              ||||||||||||||||||||||||||    
T  1908337 gttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttttgcttttgattctttgcttgaaatgaaacattaggaagcaaatat 1908436  T
Q  204 acaaagatcccaccatgttggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgataaaactcaattgaaccgataatgattc 303  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||    
T  1908437 acaaagatcccaccatgtaggttcattattgttcggtttaggaaggaaaatctaactgttacaacagttcgat-------------------aatgattc 1908517  T
Q  304 gtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaaaaaccgaactgattttttgtgga 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1908518 gtttcaaaccaaattgatataaaggtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttacaaaaaaccaaactgattttttgtgga 1908617  T
Q  404 ccgacatgtacgaaattgctatcatcaactaataataagggcttttgaaagc 455  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1908618 ccgacatgtacgaaattgctatcatcaattaataataagggcttttgaaagc 1908669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 1898800 - 1898953
Alignment:
Q  19 ataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggtg 118  Q
    ||||||| | |||||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1898800 ataggcattgcagtttgtgcttggacagttcgcttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtg 1898899  T
Q  119 ttatgttccttggtgatactcttcatgttggaaggtatggttaattgaattttt 172  Q
    ||||||| |||||||||||||||||||||||||||||| || |||| |||||||    
T  1898900 ttatgtttcttggtgatactcttcatgttggaaggtatagtaaattcaattttt 1898953  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 1888238 - 1888391
Alignment:
Q  19 ataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggtg 118  Q
    ||||| |||| ||||| ||| |||||  | || |||||||| || |||||||||||||||||||||||||| |||||||||||||||| || |||  |||    
T  1888238 atagggaatatagtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtg 1888337  T
Q  119 ttatgttccttggtgatactcttcatgttggaaggtatggttaattgaattttt 172  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  1888338 ttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt 1888391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 1893124 - 1893239
Alignment:
Q  55 aagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggt 154  Q
    |||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||| |||||||||    
T  1893124 aagggggctgtctatgtaacctcattcaagcctctacaaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggt 1893223  T
Q  155 atggttaattgaattt 170  Q
    |||||||||| |||||    
T  1893224 atggttaatttaattt 1893239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 1880971 - 1881090
Alignment:
Q  52 ttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaa 151  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||  |||||| || ||| | |||||| ||||||||||||||||||||||||||||    
T  1880971 ttaaagggagctgtctatgtaacatcattcaagccactccaaattgtgttttctgttgccttggctgttatattccttggtgatactcttcatgttggaa 1881070  T
Q  152 ggtatggttaattgaatttt 171  Q
    ||||||||| ||| ||||||    
T  1881071 ggtatggtttattcaatttt 1881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 1914151 - 1914270
Alignment:
Q  52 ttaaagggggcagtctatgtaacatcattcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaa 151  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||| | | || || ||||| ||||||||||||||||||||| ||||||    
T  1914151 ttaaagggggctgtctatgtaacctcattcaagccactgcaaattgttatctctgtttggttgggagttatattccttggtgatactcttcatcttggaa 1914250  T
Q  152 ggtatggttaattgaatttt 171  Q
    ||||||||||||| ||||||    
T  1914251 ggtatggttaattcaatttt 1914270  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 366 - 454
Target Start/End: Original strand, 1899206 - 1899295
Alignment:
Q  366 aaatacctttacaaaaaaccgaactgattttttgtggaccgacatgtacgaaattgctatcatc-aactaataataagggcttttgaaag 454  Q
    |||||||||||  |||||||| | ||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||    
T  1899206 aaatacctttaacaaaaaccgtattgattttttgtggaccgacatgtacaacattgctatcatcaaaccaataataagggcttttgaaag 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 1899119 - 1899195
Alignment:
Q  328 gtttagtgcactgatcatgtggttttcaaccgagctgaaaatacctttac-aaaaaaccgaactgattttttgtgga 403  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  1899119 gtttagtgcaccgattatgtggttttcaaccgagctgaaaatacctttacaaaaaaaccgaactgattctttttgga 1899195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 1919164 - 1919239
Alignment:
Q  79 ttcaagccacttcaaattgttatttctgctggcttaggtgttatgttccttggtgatactcttcatgttggaaggt 154  Q
    ||||||||||||  |||||||||| ||| ||   | ||| || ||||||||||||||||||||||| |||||||||    
T  1919164 ttcaagccactttcaattgttattgctgttgctatgggtattttgttccttggtgatactcttcatattggaaggt 1919239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 513
Target Start/End: Original strand, 1904486 - 1904514
Alignment:
Q  485 tgaatcacaacgatgataaccgaacttca 513  Q
    |||||||||||||||||||||||||||||    
T  1904486 tgaatcacaacgatgataaccgaacttca 1904514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 513
Target Start/End: Original strand, 1908719 - 1908747
Alignment:
Q  485 tgaatcacaacgatgataaccgaacttca 513  Q
    |||||||||||||||||||||||||||||    
T  1908719 tgaatcacaacgatgataaccgaacttca 1908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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