View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2505_high_34 (Length: 230)

Name: NF2505_high_34
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2505_high_34
NF2505_high_34
[»] chr8 (4 HSPs)
chr8 (6-153)||(3419098-3419245)
chr8 (8-40)||(25831-25863)
chr8 (8-40)||(22720754-22720786)
chr8 (8-40)||(26430542-26430574)
[»] chr7 (2 HSPs)
chr7 (6-40)||(30022470-30022504)
chr7 (8-40)||(34486647-34486679)
[»] chr5 (2 HSPs)
chr5 (8-38)||(3306440-3306470)
chr5 (7-40)||(5573977-5574010)
[»] chr4 (5 HSPs)
chr4 (7-36)||(6644974-6645003)
chr4 (7-40)||(48084065-48084098)
chr4 (7-36)||(54283343-54283372)
chr4 (8-40)||(25706180-25706212)
chr4 (8-36)||(35194935-35194963)
[»] chr3 (3 HSPs)
chr3 (7-36)||(24782104-24782133)
chr3 (7-40)||(25360379-25360412)
chr3 (7-36)||(40791366-40791395)
[»] chr1 (2 HSPs)
chr1 (7-40)||(18806645-18806678)
chr1 (8-36)||(43281192-43281220)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-36)||(38262-38290)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 3419098 - 3419245
Alignment:
Q  6 agtaattgacgaaacttacaatttcagaaggataaatactaggagagtgcggtcatttcttgagatactctctaatcttcgaaattatccctccttgtgt 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3419098 agtaattgacgaaacttacaatttcagaacgataaatactaggagagtgcggtcatttcttgagatactctctaatcttcgaaattatccctccttgtgt 3419197  T
Q  106 tgagtactatatgatttgattaatgatatcacttaaattgaatttggc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3419198 tgagtactatatgatttgattaatgatatcacttaaattgaatttggc 3419245  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 25863 - 25831
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggataa 40  Q
    |||||||||||||||||||||||||| ||||||    
T  25863 taattgacgaaacttacaatttcagagggataa 25831  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 22720754 - 22720786
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||||||||||||||||||||| |||||||    
T  22720754 taattgacgaaacttacaatttcaggaggataa 22720786  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 26430574 - 26430542
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||| |||||||||||||||||||||||||    
T  26430574 taattgatgaaacttacaatttcagaaggataa 26430542  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 30022504 - 30022470
Alignment:
Q  6 agtaattgacgaaacttacaatttcagaaggataa 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  30022504 agtaattgacgaaacttacaatttcagatggataa 30022470  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 34486679 - 34486647
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||||||||||||||||||||||| |||||    
T  34486679 taattgacgaaacttacaatttcagaaagataa 34486647  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 3306470 - 3306440
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggat 38  Q
    |||||||||||||||||||||||||||||||    
T  3306470 taattgacgaaacttacaatttcagaaggat 3306440  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 5574010 - 5573977
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||||||||||||||||||||||| ||||||    
T  5574010 gtaattgacgaaacttacaatttcagagggataa 5573977  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 6644974 - 6645003
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaagg 36  Q
    ||||||||||||||||||||||||||||||    
T  6644974 gtaattgacgaaacttacaatttcagaagg 6645003  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 48084065 - 48084098
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||||||||||||||||||||| ||||||||    
T  48084065 gtaattgacgaaacttacaatttcaaaaggataa 48084098  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 54283372 - 54283343
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaagg 36  Q
    ||||||||||||||||||||||||||||||    
T  54283372 gtaattgacgaaacttacaatttcagaagg 54283343  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 25706180 - 25706212
Alignment:
Q  8 taattgacgaaacttacaatttcagaaggataa 40  Q
    |||||||||||||||||||||||||| ||||||    
T  25706180 taattgacgaaacttacaatttcagagggataa 25706212  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 35194935 - 35194963
Alignment:
Q  8 taattgacgaaacttacaatttcagaagg 36  Q
    |||||||||||||||||||||||||||||    
T  35194935 taattgacgaaacttacaatttcagaagg 35194963  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 24782133 - 24782104
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaagg 36  Q
    ||||||||||||||||||||||||||||||    
T  24782133 gtaattgacgaaacttacaatttcagaagg 24782104  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 25360379 - 25360412
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaaggataa 40  Q
    ||||||||||||||||||||||||||| ||||||    
T  25360379 gtaattgacgaaacttacaatttcagagggataa 25360412  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 40791395 - 40791366
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaagg 36  Q
    ||||||||||||||||||||||||||||||    
T  40791395 gtaattgacgaaacttacaatttcagaagg 40791366  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 18806678 - 18806645
Alignment:
Q  7 gtaattgacgaaacttacaatttcagaaggataa 40  Q
    |||||||||||||||||||||||||| |||||||    
T  18806678 gtaattgacgaaacttacaatttcaggaggataa 18806645  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 43281220 - 43281192
Alignment:
Q  8 taattgacgaaacttacaatttcagaagg 36  Q
    |||||||||||||||||||||||||||||    
T  43281220 taattgacgaaacttacaatttcagaagg 43281192  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 38262 - 38290
Alignment:
Q  8 taattgacgaaacttacaatttcagaagg 36  Q
    |||||||||||||||||||||||||||||    
T  38262 taattgacgaaacttacaatttcagaagg 38290  T

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