View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_5 (Length: 475)
Name: NF2505_high_5
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 54218267 - 54218705
Alignment:
| Q |
15 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaa |
114 |
Q |
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| T |
54218267 |
caaagggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaa |
54218366 |
T |
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| Q |
115 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
214 |
Q |
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| T |
54218367 |
ttttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacga |
54218466 |
T |
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| Q |
215 |
tcaagtttttgatctgcgttccttacaataacttgacattcctcgtaggacaactagctacatatatattcctttgttttagcctttagtaggaggaagg |
314 |
Q |
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| T |
54218467 |
tcaagtttttgatctgtgttccttacaataacttgacattcttcgtaggacaactagctacatatatat-------ttttagcctttagtaggaggaagg |
54218559 |
T |
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| Q |
315 |
gagatcttttgaaagacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaag---aaccattcttaacatataaatggtttcatttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
54218560 |
gagatcttttgaaagacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaagaacaaccattcttaacatataaatagtttcatttc |
54218659 |
T |
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| Q |
412 |
cagcaacaattgatcatttaccaatcaaacagaacatggtccgtac |
457 |
Q |
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| T |
54218660 |
cagcaacaattgatcatttatcaatcaaacagaacatggtccgtac |
54218705 |
T |
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