View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_6 (Length: 425)
Name: NF2505_high_6
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 3068457 - 3068773
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatgtcttggagtatgcttgtgaaatatttactgttcactaaac |
100 |
Q |
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| T |
3068457 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatgtcttggagtatacttgtgaaatatttactgttcactaaac |
3068556 |
T |
|
| Q |
101 |
gcagttacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctcaaatcatcattatcttgaatgtattaaggctgcttataa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068557 |
gcagctacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctcaaatcatcattatcttgaatgtattaaggctgcttataa |
3068656 |
T |
|
| Q |
201 |
ctttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068657 |
ctttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaat |
3068756 |
T |
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| Q |
301 |
atttattattgttaaaa |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
3068757 |
atttattattgttaaaa |
3068773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 63 - 399
Target Start/End: Original strand, 3081715 - 3082052
Alignment:
| Q |
63 |
ttggagtatgcttgtgaaatatttactgttcactaaacgcagttacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctca |
162 |
Q |
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| T |
3081715 |
ttggagtgtgcttgtgaaatatttactgttcactaaatgtagttactttttattctaggtgcctccatcagaaaattcgaaactaatgagctttggctca |
3081814 |
T |
|
| Q |
163 |
aatcatcattatcttgaatgtattaaggctgcttataactttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggc |
262 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
3081815 |
aatcatcattatcttgaatgtatcaaggctgcttataactttgcaagtggtgaactcgtgaatctcattaaggaaaaggtgattttaaatatatttaggc |
3081914 |
T |
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| Q |
263 |
-ttttaagttctcagcttacagtttaatacttctgcaatatttattattgttaaaaatccaagttcttatcgtgaattgtgtttgtatgtgtagtacgat |
361 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| |
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| T |
3081915 |
tttttaagttctcagcttacagtttaatgcttctgcaatatttgttattgtttaaaatccaagttctgattgtgaattgtgtttgtatgtgtagtatgat |
3082014 |
T |
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| Q |
362 |
ctaacaggaaaattgcggtctataaaacactaccttct |
399 |
Q |
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| T |
3082015 |
ctaacaggaaaattgcggtctataaaacactaccttct |
3082052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 3069150 - 3069250
Alignment:
| Q |
309 |
ttgttaaaaatccaagttcttatcgtgaattgtgtttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
408 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069150 |
ttgttaaaaatccaagttcttatcgtgaattgtatttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
3069249 |
T |
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| Q |
409 |
c |
409 |
Q |
| |
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| |
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| T |
3069250 |
c |
3069250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3034005 - 3033946
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
60 |
Q |
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|||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
3034005 |
ccagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatg |
3033946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3042045 - 3041986
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
60 |
Q |
| |
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|||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
3042045 |
ccagaaggtgaaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatg |
3041986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3064433 - 3064492
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
60 |
Q |
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||||||||||||||||||||||||||| | | ||| | |||||||||||||||||||||| |
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| T |
3064433 |
ccagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatg |
3064492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3054867 - 3054808
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
60 |
Q |
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|||||||| ||||||||||||| |||||||| || || ||||||||||||||||||||| |
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| T |
3054867 |
ccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatg |
3054808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3066470 - 3066529
Alignment:
| Q |
1 |
ccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
60 |
Q |
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||||||||||||| |||||||| |||| || ||| | |||||||||||||||||||||| |
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| T |
3066470 |
ccagaaggtgaaaacaaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatg |
3066529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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