View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_13 (Length: 310)
Name: NF2505_low_13
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 43925694 - 43925838
Alignment:
| Q |
10 |
ttgagaacaatttaacccaaagaacaggaaaaagagacaaatcaaacatagacacttacaaattaggaaacaccaccacaatttcctacaccaaaccaat |
109 |
Q |
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| T |
43925694 |
ttgagaacaatttaacccaaagaacaggaaaaagagacaaatcaaacatagacacgtacaaattaggaaacaccaccacaatttcctacaccaaaccaat |
43925793 |
T |
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| Q |
110 |
aatcgatcatcaaattcaaatttcaatgttcagatttttgtagat |
154 |
Q |
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| T |
43925794 |
aatcgatcatcaaattcaaatttcaatgttcagatttttgtagat |
43925838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 43925903 - 43925970
Alignment:
| Q |
231 |
catgttacacttacacaaatctcctatggccatgccaacctcgtatggatcaaactcacgttgttttt |
298 |
Q |
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| T |
43925903 |
catgttacacttacacaaatctcctatggccatgccaacctcgtatggatcaaactcacgttgttttt |
43925970 |
T |
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