View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_15 (Length: 284)
Name: NF2505_low_15
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 52 - 268
Target Start/End: Complemental strand, 35626037 - 35625821
Alignment:
| Q |
52 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
151 |
Q |
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| T |
35626037 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
35625938 |
T |
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| Q |
152 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
251 |
Q |
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| T |
35625937 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
35625838 |
T |
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| Q |
252 |
ttcagaactcatgtact |
268 |
Q |
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||||||||||||||||| |
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| T |
35625837 |
ttcagaactcatgtact |
35625821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35626269 - 35626221
Alignment:
| Q |
13 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
61 |
Q |
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| T |
35626269 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
35626221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 4235404 - 4235533
Alignment:
| Q |
118 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
217 |
Q |
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| T |
4235404 |
attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg |
4235503 |
T |
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| Q |
218 |
atcaattgcaaagtttaaccatcaaaatca |
247 |
Q |
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| T |
4235504 |
atcaattgcaaagtttaaccatcaaaatca |
4235533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 49144997 - 49145126
Alignment:
| Q |
118 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
217 |
Q |
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| T |
49144997 |
attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg |
49145096 |
T |
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| Q |
218 |
atcaattgcaaagtttaaccatcaaaatca |
247 |
Q |
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| T |
49145097 |
atcaattgcaaagtttagccatcaaaatca |
49145126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 49149524 - 49149668
Alignment:
| Q |
98 |
attcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggt |
197 |
Q |
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| T |
49149524 |
attcaacacaatggagagagattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggt |
49149623 |
T |
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| Q |
198 |
gccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaa |
242 |
Q |
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| T |
49149624 |
gctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa |
49149668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28614673 - 28614756
Alignment:
| Q |
161 |
caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaa |
244 |
Q |
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| T |
28614673 |
caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaa |
28614756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 28613035 - 28612946
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaa |
243 |
Q |
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||||||||||||| ||||||| |||||||||||| |||| | || ||||||||||| |||| |||| |||||||| |||||||||||| |
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| T |
28613035 |
ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaa |
28612946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 28621265 - 28621358
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatca |
247 |
Q |
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|||||||||| || ||||||| || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| |
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| T |
28621265 |
ttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatca |
28621358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 29269810 - 29269903
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatca |
247 |
Q |
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|||||||| |||| ||||||| |||||||||||| |||| |||| |||||||||| || | ||||||||||||| |||||||| ||||||| |
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| T |
29269810 |
ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatca |
29269903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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