View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2505_low_16 (Length: 277)

Name: NF2505_low_16
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2505_low_16
NF2505_low_16
[»] chr8 (8 HSPs)
chr8 (9-247)||(36433493-36433727)
chr8 (95-208)||(481008-481122)
chr8 (38-72)||(36433726-36433760)
chr8 (109-210)||(2114879-2114980)
chr8 (95-140)||(44444610-44444655)
chr8 (107-210)||(12770363-12770467)
chr8 (87-139)||(22437742-22437794)
chr8 (107-192)||(41272107-41272193)
[»] chr2 (7 HSPs)
chr2 (84-209)||(20919606-20919732)
chr2 (88-152)||(7379552-7379616)
chr2 (110-202)||(44920018-44920110)
chr2 (108-197)||(23919449-23919539)
chr2 (117-208)||(2145716-2145808)
chr2 (161-209)||(4858727-4858775)
chr2 (90-138)||(43146424-43146472)
[»] chr1 (8 HSPs)
chr1 (87-209)||(11333660-11333783)
chr1 (87-209)||(11491681-11491804)
chr1 (88-152)||(52426865-52426929)
chr1 (107-208)||(47469044-47469146)
chr1 (98-152)||(7000924-7000978)
chr1 (107-206)||(36666547-36666647)
chr1 (108-152)||(45416150-45416194)
chr1 (107-196)||(50118981-50119071)
[»] chr7 (8 HSPs)
chr7 (102-197)||(41331045-41331141)
chr7 (107-208)||(40518860-40518962)
chr7 (107-208)||(32086121-32086224)
chr7 (116-192)||(37411717-37411794)
chr7 (107-213)||(35499529-35499636)
chr7 (106-139)||(44831592-44831625)
chr7 (108-152)||(2846032-2846076)
chr7 (107-198)||(7836907-7836999)
[»] chr4 (12 HSPs)
chr4 (107-197)||(29406365-29406456)
chr4 (161-209)||(23924898-23924946)
chr4 (161-209)||(24704125-24704173)
chr4 (87-152)||(42664035-42664100)
chr4 (88-152)||(32760696-32760760)
chr4 (107-197)||(2629587-2629678)
chr4 (116-197)||(11294818-11294900)
chr4 (107-152)||(2688150-2688195)
chr4 (88-129)||(6777517-6777558)
chr4 (161-209)||(16975068-16975116)
chr4 (87-139)||(42002373-42002425)
chr4 (107-206)||(51890796-51890896)
[»] chr5 (6 HSPs)
chr5 (107-208)||(3198324-3198426)
chr5 (117-197)||(33018507-33018587)
chr5 (107-208)||(4067979-4068081)
chr5 (108-187)||(20430583-20430663)
chr5 (95-140)||(17064817-17064862)
chr5 (88-188)||(37684498-37684599)
[»] chr3 (13 HSPs)
chr3 (84-210)||(49375629-49375756)
chr3 (105-197)||(43280076-43280169)
chr3 (98-154)||(11995183-11995239)
chr3 (107-210)||(19222557-19222661)
chr3 (165-208)||(37740763-37740806)
chr3 (107-192)||(4227715-4227801)
chr3 (107-208)||(24303387-24303489)
chr3 (116-197)||(48515365-48515447)
chr3 (107-192)||(54408521-54408607)
chr3 (107-191)||(7253491-7253576)
chr3 (114-208)||(49983686-49983781)
chr3 (88-140)||(29098758-29098810)
chr3 (107-208)||(46844942-46845044)
[»] chr6 (5 HSPs)
chr6 (114-211)||(32620049-32620147)
chr6 (84-140)||(8443605-8443661)
chr6 (84-140)||(8452409-8452465)
chr6 (107-196)||(15305075-15305165)
chr6 (161-214)||(25088284-25088337)
[»] scaffold0257 (1 HSPs)
scaffold0257 (95-149)||(21851-21905)
[»] scaffold0729 (1 HSPs)
scaffold0729 (88-129)||(3698-3739)
[»] scaffold0154 (1 HSPs)
scaffold0154 (107-202)||(28792-28888)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 36433727 - 36433493
Alignment:
Q  9 aatataaaataagagaatatcaatggtaatagtagtacaaaataacatcaatttgttccaaaaaacnnnnnnnnngttt--agtagtatagtgactaaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||           | |  ||||||||||||  |||||    
T  36433727 aatataaaataagagaatatcaatggtaatagtagtaca--------tcaatttgttccaaaaaaactttcttttttgtccagtagtatagtggttaaaa 36433636  T
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaagtttacgg 204  Q
    |||||| |||||||||||||||||||||||||||   ||||||||| |||||||  | ||||||| |  |||||||||| |||||||||||||||||| |    
T  36433635 ctcacacaattaaatgtggagaaatggggtgtccgagattcgaacccccaacccctgtataaattatacaatgtccctatcaattgagttaagtttactg 36433536  T
Q  205 ggacaaatttaaactttgtataggtgtgtttgatttactaaaa 247  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  36433535 ggacaaatttaaactttttataggtgtgtttgatttactaaaa 36433493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 481122 - 481008
Alignment:
Q  95 tagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagt 193  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || |||||||||||||| ||||     
T  481122 tagtggctaaatctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccgcggcccctgcataaattatgcaatgtccctaccaactgagc 481023  T
Q  194 taagtttacggggac 208  Q
    |||| | ||||||||    
T  481022 taagctcacggggac 481008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 36433760 - 36433726
Alignment:
Q  38 tagtagtacaaaataacatcaatttgttccaaaaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  36433760 tagtagtacaaaataacatcaatttgttccaaaaa 36433726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 2114980 - 2114879
Alignment:
Q  109 cacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaacccgcataaattctgtaatgtccctaccaattgagttaagtttacggggac 208  Q
    |||| |||||||||||||||| |||||||||| || |||||||||    |  ||||||| | |||| |||| ||||||| ||||||||| | ||||||||    
T  2114980 cacacaattaaatgtggagaagtggggtgtccggagttcgaacctggcccttgcataaaatatgtattgtctctaccaactgagttaagctcacggggac 2114881  T
Q  209 aa 210  Q
    ||    
T  2114880 aa 2114879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 44444655 - 44444610
Alignment:
Q  95 tagtgactaaaactcacataattaaatgtggagaaatggggtgtcc 140  Q
    ||||| |||||||||||| |||||| ||||||||| ||||||||||    
T  44444655 tagtggctaaaactcacacaattaattgtggagaagtggggtgtcc 44444610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 12770467 - 12770363
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || |||||||||| ||| |||| |||| | | |||    
T  12770467 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagctcatggg 12770368  T
Q  206 gacaa 210  Q
    |||||    
T  12770367 gacaa 12770363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 22437742 - 22437794
Alignment:
Q  87 tagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtc 139  Q
    ||||||| |||||||| |||||||||  ||||||||||||||| || ||||||    
T  22437742 tagtagtctagtgactgaaactcacacgattaaatgtggagaactgaggtgtc 22437794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 41272193 - 41272107
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgag 192  Q
    |||||| | |||||||||||||| ||| |||||| || |||||||| ||| |||  ||||||||| || ||||||||||| |||||||    
T  41272193 ctcacacatttaaatgtggagaagtggtgtgtccagagttcgaacc-ccagcccctgcataaattatgcaatgtccctactaattgag 41272107  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 20919732 - 20919606
Alignment:
Q  84 gtttagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccct 182  Q
    |||||||||  ||||| ||| | ||||||||||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || |||||||||    
T  20919732 gtttagtagcctagtggctagagctcacataattaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccct 20919633  T
Q  183 accaattgagttaagtttacggggaca 209  Q
    ||||| |||| |||| | |||||||||    
T  20919632 accaactgagctaagctcacggggaca 20919606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 7379552 - 7379616
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    |||||| ||||| ||| |||||||| |  |||||||||||||||||||||| | |||||||||||    
T  7379552 agtagtttagtggctagaactcacacatataaatgtggagaaatggggtgttcggaattcgaacc 7379616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 44920110 - 44920018
Alignment:
Q  110 acataattaaatgtggagaaatggggtgtcctgaattcgaacctccaacccgcataaattctgtaatgtccctaccaattgagttaagtttac 202  Q
    |||||||||||| || |||| ||||||||||    |||||||||| | || ||||||||| || ||||||||||||||  |||||||| ||||    
T  44920110 acataattaaatatgtagaagtggggtgtccgatgttcgaacctcaaccctgcataaattatgcaatgtccctaccaaccgagttaagcttac 44920018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 23919449 - 23919539
Alignment:
Q  108 tcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    ||||| ||||||||||||||||||||||||||  | ||||||||| | | |||  |||| ||| || |||||||||||||| |||| ||||    
T  23919449 tcacacaattaaatgtggagaaatggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaag 23919539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 2145716 - 2145808
Alignment:
Q  117 taaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggggac 208  Q
    ||||||||||||| |||||||||  | |||| ||||||   ||| ||||||||| || |||||||||||||| |||  |||||| ||||||||    
T  2145716 taaatgtggagaagtggggtgtcagggattcaaacctctgcccctgcataaattatgcaatgtccctaccaactgaactaagttcacggggac 2145808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 4858727 - 4858775
Alignment:
Q  161 gcataaattctgtaatgtccctaccaattgagttaagtttacggggaca 209  Q
    ||||||||| || |||||||||||||| | ||||||||| |||||||||    
T  4858727 gcataaattatgcaatgtccctaccaactaagttaagttcacggggaca 4858775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 43146472 - 43146424
Alignment:
Q  90 tagtatagtgactaaaactcacataattaaatgtggagaaatggggtgt 138  Q
    |||| |||||| || |||||||| |||||||||||||||| ||||||||    
T  43146472 tagtttagtgattagaactcacacaattaaatgtggagaagtggggtgt 43146424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 11333783 - 11333660
Alignment:
Q  87 tagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctac 184  Q
    ||||||| ||||||||| | |||||| |||||||||||||||| |||||||||| |  |||||| ||||  |||  ||||||||| || |||||||||||    
T  11333783 tagtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaa-ctccggcccctgcataaattatgcaatgtccctac 11333685  T
Q  185 caattgagttaagtttacggggaca 209  Q
    ||| |||| |||||| |||| ||||    
T  11333684 caactgagctaagttcacggagaca 11333660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 11491804 - 11491681
Alignment:
Q  87 tagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctac 184  Q
    ||||||| ||||||||| | |||||| |||||||||||||||| |||||||||| |  |||||| ||||  |||  ||||||||| || |||||||||||    
T  11491804 tagtagtctagtgactagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaa-ctccggcccctgcataaattatgcaatgtccctac 11491706  T
Q  185 caattgagttaagtttacggggaca 209  Q
    ||| |||| |||||| |||| ||||    
T  11491705 caactgagctaagttcacggagaca 11491681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 52426865 - 52426929
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||  || ||||||||    
T  52426865 agtagtctagtggctagaactcacatcattaaatgtggagaaatggggtgtctggagttcgaacc 52426929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 47469044 - 47469146
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  ||||||||||   ||| ||||||||| || ||||||||| |||| |||| |||| | |||||    
T  47469044 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcagcccctgcataaattatgcaatgtccctgccaactgagctaagctcacggg 47469143  T
Q  206 gac 208  Q
    |||    
T  47469144 gac 47469146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 7000924 - 7000978
Alignment:
Q  98 tgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    ||||| || |||||| |||||||||||||||| |||||||||| || ||||||||    
T  7000924 tgactgaagctcacacaattaaatgtggagaagtggggtgtccggagttcgaacc 7000978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 36666547 - 36666647
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||| ||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || |||||||||||||| |||| |||| | |||||    
T  36666547 ctcacacaattaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctcacggg 36666646  T
Q  206 g 206  Q
    |    
T  36666647 g 36666647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 45416150 - 45416194
Alignment:
Q  108 tcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    ||||| |||||||||||||||| |||||||||| | |||||||||    
T  45416150 tcacacaattaaatgtggagaagtggggtgtccgggattcgaacc 45416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 50119071 - 50118981
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaa 196  Q
    |||||| |||||||||||||||| |||||||||| |  |||||| |||| ||||  ||||||| | || | |||||||||||| ||||||||    
T  50119071 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaa-ctccgacccctgcataaaatatggattgtccctaccaagtgagttaa 50118981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 41331045 - 41331141
Alignment:
Q  102 taaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||| |||||| |||||||||||||||| |||||||||| ||||||||||| | | ||| ||||||||| || ||||||||| |||| |||| ||||    
T  41331045 taaagctcacacaattaaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtccctgccaactgagctaag 41331141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 40518860 - 40518962
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaagtttacgg 204  Q
    |||||| |||||||||||||||| |||||||||| || |||||| | |||||||   |||| ||| || |||||||||||||| |||| |||||| ||||    
T  40518860 ctcacacaattaaatgtggagaagtggggtgtccggagttcgaatc-ccaacccctacatatattatgcaatgtccctaccaactgagctaagttcacgg 40518958  T
Q  205 ggac 208  Q
    ||||    
T  40518959 ggac 40518962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 32086121 - 32086224
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc---gcataaattctgtaatgtccctaccaattgagttaagtttacg 203  Q
    |||| |||||||||||||||||||||  |||||| || ||||||| ||| ||||   || |||||| |   ||||||||||||||||||||||||| |||    
T  32086121 ctcatataattaaatgtggagaaatgtagtgtccggagttcgaac-tccgaccccctgcctaaattatactatgtccctaccaattgagttaagttcacg 32086219  T
Q  204 gggac 208  Q
    |||||    
T  32086220 gggac 32086224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 37411717 - 37411794
Alignment:
Q  116 ttaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgag 192  Q
    |||||||||||||| |||||||||| || ||| ||| ||| ||||  ||||||||| || |||||||||||||||||||    
T  37411717 ttaaatgtggagaagtggggtgtccggagttcaaac-tccgacccctgcataaattatgcaatgtccctaccaattgag 37411794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 35499636 - 35499529
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaagtttacgg 204  Q
    |||||| ||||||||||  |||| |||||| ||| || ||| ||| |||||||   ||||||| | || |||||||||||||| |||| |||||| ||||    
T  35499636 ctcacacaattaaatgtaaagaagtggggtatccggagttcaaac-tccaaccactgcataaactatgcaatgtccctaccaactgagataagttcacgg 35499538  T
Q  205 ggacaaatt 213  Q
    |||||||||    
T  35499537 ggacaaatt 35499529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 44831592 - 44831625
Alignment:
Q  106 actcacataattaaatgtggagaaatggggtgtc 139  Q
    |||||||||||||||||||||||| |||||||||    
T  44831592 actcacataattaaatgtggagaagtggggtgtc 44831625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 2846032 - 2846076
Alignment:
Q  108 tcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    |||||||||||||||||||||| ||||||||| ||  ||||||||    
T  2846032 tcacataattaaatgtggagaagtggggtgtcttgggttcgaacc 2846076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 7836907 - 7836999
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagt 198  Q
    |||||| |||||||||||||||| ||| |||| | || |||||||| | | ||| ||||||||| |  |||||||||| ||| ||||||||||    
T  7836907 ctcacacaattaaatgtggagaagtggtgtgttcggagttcgaaccccgatccctgcataaattatacaatgtccctatcaactgagttaagt 7836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 29406456 - 29406365
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||||| |||||||||||||||| |||| ||||| || |||||||| | | ||| ||||||||| || ||||||||||||||||||| ||||    
T  29406456 ctcacacaattaaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaattgagctaag 29406365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 23924898 - 23924946
Alignment:
Q  161 gcataaattctgtaatgtccctaccaattgagttaagtttacggggaca 209  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||    
T  23924898 gcataaattatgcaatgtccctaccaattgagttaagttcacggggaca 23924946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 24704173 - 24704125
Alignment:
Q  161 gcataaattctgtaatgtccctaccaattgagttaagtttacggggaca 209  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  24704173 gcataaattatgcaatgttcctaccaattgagttaagtttacggggaca 24704125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 42664100 - 42664035
Alignment:
Q  87 tagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    ||||||| ||||| ||| | |||||| |||||||||||||||| |||||||||| | |||||||||    
T  42664100 tagtagtctagtggctagagctcacacaattaaatgtggagaagtggggtgtccaggattcgaacc 42664035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 32760760 - 32760696
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    |||||| ||||| ||| || ||||| |||||| |||||||||||||||||||| || ||||||||    
T  32760760 agtagtctagtggctagaattcacacaattaattgtggagaaatggggtgtccggagttcgaacc 32760696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 2629678 - 2629587
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||||| |||||||||||||||| |||||||| | |  |||||||| | | ||| ||||||||| || ||||||||| ||||||||| ||||    
T  2629678 ctcacacaattaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatgcaatgtccctgccaattgagctaag 2629587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 11294818 - 11294900
Alignment:
Q  116 ttaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || ||||||||| ||||||||||||||    
T  11294818 ttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaattgagttaag 11294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 2688195 - 2688150
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacc 152  Q
    |||||| | ||||||||||||||||||||||||| | |||||||||    
T  2688195 ctcacacatttaaatgtggagaaatggggtgtccgggattcgaacc 2688150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 6777517 - 6777558
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaa 129  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  6777517 agtagtatagtgactagagctcacacaattaaatgtggagaa 6777558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 16975116 - 16975068
Alignment:
Q  161 gcataaattctgtaatgtccctaccaattgagttaagtttacggggaca 209  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| |||||    
T  16975116 gcataaattatgcaatgtccctaccaattgagctaagcttacgaggaca 16975068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 42002425 - 42002373
Alignment:
Q  87 tagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtc 139  Q
    ||||||| ||||| ||| | |||||| |||||||||||||||| |||||||||    
T  42002425 tagtagtttagtggctagagctcacacaattaaatgtggagaagtggggtgtc 42002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 51890896 - 51890796
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || ||||||||| |||| |||| |||| | |||||    
T  51890896 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctcacggg 51890797  T
Q  206 g 206  Q
    |    
T  51890796 g 51890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 3198426 - 3198324
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    ||||||||||||||||||||||| | |||||||| |  |||||||||| | ||| ||||| ||| || |||||||||||||| |||| |||| | |||||    
T  3198426 ctcacataattaaatgtggagaagtagggtgtccggggttcgaacctcaacccctgcatatattatgcaatgtccctaccaactgagctaagctcacggg 3198327  T
Q  206 gac 208  Q
    |||    
T  3198326 gac 3198324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 33018507 - 33018587
Alignment:
Q  117 taaatgtggagaaatggggtgtcctgaattcgaacctccaacccgcataaattctgtaatgtccctaccaattgagttaag 197  Q
    ||||||||||||| ||||||||||  | |||||||| | | || ||||||||| || ||| ||||||||| ||||||||||    
T  33018507 taaatgtggagaagtggggtgtccgaagttcgaaccccgaccctgcataaattatgcaatatccctaccagttgagttaag 33018587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 4068081 - 4067979
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctc-caacccgcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||||| |  || ||||||| | || | |||||||||||| |||| |||| | |||||    
T  4068081 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaacctcgccccctgcataaaatatgcattgtccctaccaactgagctaagctcacggg 4067982  T
Q  206 gac 208  Q
    |||    
T  4067981 gac 4067979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 20430663 - 20430583
Alignment:
Q  108 tcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaac--ccgcataaattctgtaatgtccctaccaa 187  Q
    ||||| ||||||| ||||||||||||||||||| || |||||||| ||| |  | ||||||||| | |||||||||||||||    
T  20430663 tcacacaattaaaggtggagaaatggggtgtccggatttcgaacc-ccagcctctgcataaattatataatgtccctaccaa 20430583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 17064817 - 17064862
Alignment:
Q  95 tagtgactaaaactcacataattaaatgtggagaaatggggtgtcc 140  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||    
T  17064817 tagtggctagaactcacacaattaaatgtggagaagtggggtgtcc 17064862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 37684498 - 37684599
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaac-ccgcataaattctgtaatgtccctacca 186  Q
    |||||| ||||| ||| | |||||| ||||||||||||| || |||||||||  || |||||||||| | | | ||||||||| || ||||||||| |||    
T  37684498 agtagtgtagtggctatagctcacacaattaaatgtggataagtggggtgtctggagttcgaacctcgacctctgcataaattatgcaatgtccctgcca 37684597  T
Q  187 at 188  Q
    ||    
T  37684598 at 37684599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 49375629 - 49375756
Alignment:
Q  84 gtttagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccc 181  Q
    |||||||||  || || ||| ||||||||||||||||||||| ||| ||| |||||| |  |||||||  ||| |||  ||||||||| |||||||||||    
T  49375629 gtttagtaggctaatggctagaactcacataattaaatgtggtgaagtggagtgtccggggttcgaacg-ccagcccctgcataaattatgtaatgtccc 49375727  T
Q  182 taccaattgagttaagtttacggggacaa 210  Q
    |||||| ||||||||| | |||| |||||    
T  49375728 taccaactgagttaagctcacggagacaa 49375756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 43280169 - 43280076
Alignment:
Q  105 aactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||||||| | |||||||||||||| |||||||||| | ||||||||| |   ||| ||||||||| || ||||||||| ||||||||| ||||    
T  43280169 aactcacacatttaaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcataaattatgcaatgtccctgccaattgagctaag 43280076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 11995239 - 11995183
Alignment:
Q  98 tgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcgaacctc 154  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||| || || |||||||    
T  11995239 tgactgaaactcacacaattaaatgtggagaaatgaggtgtccggagtttgaacctc 11995183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 19222557 - 19222661
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || ||||||||| |||| ||||||||| | ||| |    
T  19222557 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagttaagctcacgcg 19222656  T
Q  206 gacaa 210  Q
    |||||    
T  19222657 gacaa 19222661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 37740806 - 37740763
Alignment:
Q  165 aaattctgtaatgtccctaccaattgagttaagtttacggggac 208  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||    
T  37740806 aaattatgtaatgtccctaccaattgagttaagttgatggggac 37740763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 4227715 - 4227801
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgag 192  Q
    |||||| |||||| | ||||||| |||||||||| || |||||||| | | ||| ||||||||| || |||||||||||||| ||||    
T  4227715 ctcacacaattaattatggagaagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaactgag 4227801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 24303489 - 24303387
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttacggg 205  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||||| || ||||||||| |||| |||| |||| | |||||    
T  24303489 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaactgagctaagctcacggg 24303390  T
Q  206 gac 208  Q
    |||    
T  24303389 gac 24303387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 48515365 - 48515447
Alignment:
Q  116 ttaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaag 197  Q
    |||||||||||||| || ||||||| |  |||||||||| | ||| ||||||||| || ||| |||||||||| |||||||||    
T  48515365 ttaaatgtggagaagtgtggtgtccggggttcgaacctcgacccctgcataaattatggaatatccctaccaactgagttaag 48515447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 54408521 - 54408607
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaac-ccgcataaattctgtaatgtccctaccaattgag 192  Q
    |||||||||||||||||||| ||||||||||||| |  |||||||| | | | | ||||||||| || ||||||||| |||| ||||    
T  54408521 ctcacataattaaatgtggaaaaatggggtgtccggggttcgaaccccgacctctgcataaattatgcaatgtccctgccaaatgag 54408607  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 7253491 - 7253576
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattga 191  Q
    |||||| ||||||||| |||||| |||||||||| |  || ||||||  | ||| ||||||||| || ||||||||||||||||||    
T  7253491 ctcacacaattaaatgcggagaagtggggtgtccggggtttgaaccttgatccctgcataaattatgcaatgtccctaccaattga 7253576  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 49983686 - 49983781
Alignment:
Q  114 aattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaagtttacggggac 208  Q
    |||||| ||||||||| | |||||||| |  |||||||| |||||||  ||||||||| |  |||||||||||||| |||| |||||| ||||||||    
T  49983686 aattaattgtggagaagtagggtgtccggggttcgaacc-ccaacccctgcataaattatacaatgtccctaccaactgagctaagttcacggggac 49983781  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 29098810 - 29098758
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcc 140  Q
    |||||| ||||| ||| |||| ||| |||||||| ||||||||||||||||||    
T  29098810 agtagtctagtggctagaacttacacaattaaatatggagaaatggggtgtcc 29098758  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 46844942 - 46845044
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc--gcataaattctgtaatgtccctaccaattgagttaagtttacgg 204  Q
    |||||| | |||||||||||||| | |||||||| |  |||||| |||| ||||  ||||||||| || ||||||||| ||||||||| |||| | ||||    
T  46844942 ctcacacatttaaatgtggagaagtagggtgtccggggttcgaa-ctccgacccctgcataaattatgcaatgtccctgccaattgagctaagctcacgg 46845040  T
Q  205 ggac 208  Q
    ||||    
T  46845041 ggac 46845044  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 32620049 - 32620147
Alignment:
Q  114 aattaaatgtggagaaatggggtgtcctgaattcgaacctccaa--cccgcataaattctgtaatgtccctaccaattgagttaagtttacggggacaaa 211  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||  || ||||||||| || ||||||| || ||| ||||||||| ||| || ||||||    
T  32620049 aattaaatgtggagaaatggggtgtccaggattcgaacc-ccaactcctgcataaattatgcaatgtccatatcaactgagttaagcttatggagacaaa 32620147  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8443661 - 8443605
Alignment:
Q  84 gtttagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcc 140  Q
    |||||||||  ||||||||| | |||||| |||||||||||||||| ||||||||||    
T  8443661 gtttagtagcctagtgactagagctcacagaattaaatgtggagaagtggggtgtcc 8443605  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8452465 - 8452409
Alignment:
Q  84 gtttagtagtatagtgactaaaactcacataattaaatgtggagaaatggggtgtcc 140  Q
    |||||||||  ||||||||| | |||||| |||||||||||||||| ||||||||||    
T  8452465 gtttagtagcctagtgactagagctcacagaattaaatgtggagaagtggggtgtcc 8452409  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 15305075 - 15305165
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctcca-acccgcataaattctgtaatgtccctaccaattgagttaa 196  Q
    ||||||||||||| ||||||||||||| ||||   || |||||||| | | ||| ||||||||| || ||||| |||||||| ||||||||    
T  15305075 ctcacataattaattgtggagaaatggagtgtttggagttcgaaccccaacacctgcataaattatgcaatgttcctaccaactgagttaa 15305165  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 25088284 - 25088337
Alignment:
Q  161 gcataaattctgtaatgtccctaccaattgagttaagtttacggggacaaattt 214  Q
    ||||||||| || |||||||||||||| | ||||||| |||||||||| |||||    
T  25088284 gcataaattatgcaatgtccctaccaactaagttaagcttacggggactaattt 25088337  T

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Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 21905 - 21851
Alignment:
Q  95 tagtgactaaaactcacataattaaatgtggagaaatggggtgtcctgaattcga 149  Q
    ||||| ||| |||||||| |||||||||||||||| |||||||||| | ||||||    
T  21905 tagtggctagaactcacaaaattaaatgtggagaattggggtgtccgggattcga 21851  T

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Target: scaffold0729 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 3739 - 3698
Alignment:
Q  88 agtagtatagtgactaaaactcacataattaaatgtggagaa 129  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  3739 agtagtatagtgactagagctcacacaattaaatgtggagaa 3698  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 28792 - 28888
Alignment:
Q  107 ctcacataattaaatgtggagaaatggggtgtcctgaattcgaacctccaaccc-gcataaattctgtaatgtccctaccaattgagttaagtttac 202  Q
    |||||| |||||||||||||||| |||||||||| |  |||||||| |   ||| ||||||| | ||||||||||||| ||| |||| |||| ||||    
T  28792 ctcacacaattaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaagtatgtaatgtccctatcaactgagctaagcttac 28888  T

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