View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_17 (Length: 274)
Name: NF2505_low_17
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 29110397 - 29110644
Alignment:
| Q |
1 |
tgcctagttatgtggtattttctttgattgtcaaatgatatatataaatgaagtaaccatgaagttgactcatgttatcctctagaaactggttctcaac |
100 |
Q |
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| T |
29110397 |
tgcctagttatgtggtattttctttgattgtcaaatgatat--ataaatgaagtaaccatgaagttgactcatgttatcctctagaaactggttctcaac |
29110494 |
T |
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| Q |
101 |
tcactgggtaaatatgattcacaattggcttagttctattctccatctccaaacttgtgtttagaagcatgcataataaaatccaacacaaaataataga |
200 |
Q |
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| T |
29110495 |
tcactgggtaaatatgattcacaattggcttagttctattctccatctccaaacttgtgtttagaagcatgcataataaaatccaacacaaaataataga |
29110594 |
T |
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| Q |
201 |
aat-attgattctaaagtaactaatatagtaaacttttaactaatcataa |
249 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29110595 |
aataattgattctaaagtaactaatatagtaaacttttaactaatcataa |
29110644 |
T |
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