View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2505_low_18 (Length: 259)
Name: NF2505_low_18
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39115774 - 39115535
Alignment:
| Q |
1 |
cacttgaactaaattgaaacacttcaagattgaacagataaaagtctaaaaccatattcacaaaaataataaataataatttttctttaaataggttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39115774 |
cacttgaactaaattgaaacacttcaagattgaacagataaaagtctaaaaccatattcacaaaaataataaataataatttttctttaaataggttggg |
39115675 |
T |
|
| Q |
101 |
ttcgcaagttcactagtttaaattataagccaattgtctaaaccaaaccaatttgaatttggttcgatgggtttaatttagggttaattcaaaatatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39115674 |
ttcgcaagttcactagtttaaattataagccaattgtctaaaccaaaccaatttgaatttggttcgatgggtttaatttagggttaattcaaaatatata |
39115575 |
T |
|
| Q |
201 |
tnnnnnnnnnctccggcttgggtttggtcatcgatttcatc |
241 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||| |
|
|
| T |
39115574 |
t-aaaaaaatctcgggcttgggtttggtcatcgatttcatc |
39115535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University