View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_19 (Length: 256)
Name: NF2505_low_19
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_19 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 27428391 - 27428590
Alignment:
| Q |
43 |
ttgtttacttcttatttgattttcaaacaataagcaaatttatttt-ggttcatattaacttcttatttcatgtatcaaacagatacagatccaaatcca |
141 |
Q |
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| T |
27428391 |
ttgtttacttcttatttgattttcaaacaattagcaattttatttttggttcatattcacttcttatttcatgtatcaaacagatacagatccaaatcca |
27428490 |
T |
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| Q |
142 |
aacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaaggccgaattccttgaggaatttattggtgataatttgctcactg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27428491 |
aacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaaggccgacttccttgaggaatttattggtgataatttgctcactg |
27428590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 27407894 - 27408011
Alignment:
| Q |
119 |
aaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaaggccgaattccttgaggaatt |
218 |
Q |
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| T |
27407894 |
aaacagatacagatccaaatccagaaaaccttcagagattgccaatatcactttctgaatctttagaagctctccataaggccgactttcttgaggaatt |
27407993 |
T |
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| Q |
219 |
tattggtgataatttgct |
236 |
Q |
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| T |
27407994 |
tatcggtgataagttgct |
27408011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 241
Target Start/End: Complemental strand, 27242073 - 27241930
Alignment:
| Q |
98 |
taacttcttatttcatgtatcaaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaa |
197 |
Q |
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| T |
27242073 |
taacttctaatttcatgtatgaaacagatacaagtccaaatctagaaaatcttcggagtttgccaaaatcactttcagaatctttggaagctctccataa |
27241974 |
T |
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| Q |
198 |
ggccgaattccttgaggaatttattggtgataatttgctcactg |
241 |
Q |
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| T |
27241973 |
ggctgacttcctggaggagtttattggggataagttgctgactg |
27241930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27428338 - 27428392
Alignment:
| Q |
10 |
attatactatggaacatgcatcatgaatagaacttgtttacttcttatttgattt |
64 |
Q |
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| T |
27428338 |
attatactatggaacatgcatcatgaatagaacttgtttacttcttatttgattt |
27428392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 27291157 - 27291017
Alignment:
| Q |
101 |
cttcttatttcatgtatcaaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaaggc |
200 |
Q |
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| T |
27291157 |
cttcatatttaatgtattatacagatggaaatccaaatctagaaaatcttcagaaattgccaaaatcactttcggagtctttggaagcactacataaggc |
27291058 |
T |
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| Q |
201 |
cgaattccttgaggaatttattggtgataatttgctcactg |
241 |
Q |
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| T |
27291057 |
tgacttccttaaggaatttattggtgataagttgctgactg |
27291017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 6842 - 6702
Alignment:
| Q |
101 |
cttcttatttcatgtatcaaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaaggc |
200 |
Q |
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|||| |||||||| || ||||||||||| ||||| ||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6842 |
cttcgtatttcatataagaaacagatacaaatccagatccagaaaaacttcagagattaccaaaatcactttcagaatctttggaagctcttcataaggc |
6743 |
T |
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| Q |
201 |
cgaattccttgaggaatttattggtgataatttgctcactg |
241 |
Q |
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| T |
6742 |
tgactttctagaggagtttattggtgacaagttgctgactg |
6702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 13295059 - 13294937
Alignment:
| Q |
99 |
aacttcttatttcatgtatcaaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaag |
198 |
Q |
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|||||| ||||| |||||| ||||||| ||||||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
13295059 |
aacttcatattttatgtatgaaacagacacagatccaaatctagaaaaccttcagagattgccaaaatcactctcagaatctttggaagctctccataag |
13294960 |
T |
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| Q |
199 |
gccgaattccttgaggaatttat |
221 |
Q |
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| || ||| |||| |||||||| |
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| T |
13294959 |
actgatttctttgatgaatttat |
13294937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 13360273 - 13360395
Alignment:
| Q |
99 |
aacttcttatttcatgtatcaaacagatacagatccaaatccaaacaaccttcagagattgccaaaatcactttcagaatctttggaagctcttcacaag |
198 |
Q |
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|||||| ||||| |||||| ||||||| | ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
13360273 |
aacttcatattttatgtatgaaacagacatagatccaaatctagacaaccttcagagattgccaaaatcactctcagaatctttggaagctctccataag |
13360372 |
T |
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| Q |
199 |
gccgaattccttgaggaatttat |
221 |
Q |
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| T |
13360373 |
actgatttctttgatgaatttat |
13360395 |
T |
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