View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_2 (Length: 534)
Name: NF2505_low_2
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 834958 - 834434
Alignment:
| Q |
1 |
atacaaataagtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatca |
100 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
834958 |
atacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaatca |
834862 |
T |
|
| Q |
101 |
aagggaatgtgattgaattgaagaataaaaggagaaattaagaagcttt-----gtatatacctctaagtcttccttgttgtcctctcctttgcaatctg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
834861 |
aagggaatgtgattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcctctcctttgcaatccg |
834762 |
T |
|
| Q |
196 |
tatatatacttaacaatttcatcctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattcttt |
295 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
834761 |
tatatatactcgacaatttcatcctgctccgtagcattgaaaacatcggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattcttt |
834662 |
T |
|
| Q |
296 |
caatgaaggtaaaatcttttttgcattgaatttcaga---ataacggatatgctcctttcgctcttccgataactcatttttagatgaagaaacatccac |
392 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
834661 |
caatgaaggtaaaatcttttttgcattgaatttcagaattataacggatatgctccttttgctcttccgataactcatttttagatgaagaaacatccac |
834562 |
T |
|
| Q |
393 |
agtttcatcatttaacaataattcagtatcagactgcttgctttctttcaga---tatttaattgaagaatcaaaattgggtttgttatccttcactgtg |
489 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
834561 |
agttccatcatttaacaataattcagtatcagactgcttgctttctttcagatattatttaattgaagaatcaaaattgggtttgttatccttcactgtg |
834462 |
T |
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| Q |
490 |
agagtagaatcatgtttttgtaaagagt |
517 |
Q |
| |
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| T |
834461 |
agagtagaatcatgtttttgtaaagagt |
834434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 813244 - 812973
Alignment:
| Q |
19 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
118 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
|
| Q |
119 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatacttaacaatttcatc |
218 |
Q |
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||||||||||| ||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcctctccgttgcaatatgtatatatagtcaacaatttcatt |
813050 |
T |
|
| Q |
219 |
ctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattcttt |
295 |
Q |
| |
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|||||||||||||||||| |||| | |||||||||||||||||| | ||||||||| ||||| || ||||| |||| |
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| T |
813049 |
ctgctccgtagcattgaagacactgctgtgaagttcaagaccctctaacaaatttatatctcttccgttgatccttt |
812973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 517
Target Start/End: Original strand, 34881692 - 34881737
Alignment:
| Q |
472 |
ttgttatccttcactgtgagagtagaatcatgtttttgtaaagagt |
517 |
Q |
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||||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
34881692 |
ttgttatccttcattgtgagaatagaatcatgtttttgtatagagt |
34881737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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