View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_23 (Length: 250)
Name: NF2505_low_23
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 5705417 - 5705606
Alignment:
| Q |
48 |
aaagatcatacacatcaacatattaatacatcacactttccaagtacgggcccacgtttaagtgagattgtgcacctgcacaccttgatcttttaaaaat |
147 |
Q |
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| T |
5705417 |
aaagatcatacacatcaacacattaatacatcccactttccaagtacgggcccacgtgtaagtgagattgtgcccctgcacaccttgatctttt-aaaat |
5705515 |
T |
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| Q |
148 |
tacacttactatcttatatttattgcattttgaccaccttgnnnnnnnnttgcaccctggccctagagacctcgctatcatctcatattcat |
239 |
Q |
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| T |
5705516 |
tacacttgctatgttatatttattgcattttgaccaccct-aaaaaaaattgcaccctggccctagagacctcgctatcatctcatattcat |
5705606 |
T |
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