View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2505_low_25 (Length: 248)

Name: NF2505_low_25
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2505_low_25
NF2505_low_25
[»] chr2 (19 HSPs)
chr2 (11-155)||(42758136-42758281)
chr2 (116-230)||(12412986-12413100)
chr2 (116-230)||(12425046-12425160)
chr2 (116-229)||(34424362-34424475)
chr2 (119-229)||(4958966-4959076)
chr2 (116-217)||(20170898-20170999)
chr2 (115-229)||(7485679-7485793)
chr2 (123-229)||(27747008-27747112)
chr2 (117-186)||(33660691-33660760)
chr2 (116-219)||(25713477-25713580)
chr2 (111-217)||(29408310-29408416)
chr2 (117-185)||(42871889-42871957)
chr2 (111-226)||(1398005-1398120)
chr2 (123-217)||(15507989-15508083)
chr2 (110-142)||(14541305-14541337)
chr2 (113-149)||(25966018-25966054)
chr2 (119-186)||(16806023-16806090)
chr2 (119-186)||(16845304-16845371)
chr2 (116-182)||(36243499-36243565)
[»] chr3 (20 HSPs)
chr3 (116-234)||(7259285-7259404)
chr3 (110-226)||(2599583-2599699)
chr3 (110-217)||(16236970-16237077)
chr3 (116-229)||(21959308-21959421)
chr3 (116-229)||(13779191-13779301)
chr3 (128-183)||(297018-297073)
chr3 (120-186)||(9589325-9589391)
chr3 (151-229)||(25841485-25841563)
chr3 (116-226)||(27817964-27818074)
chr3 (116-225)||(21933890-21933999)
chr3 (126-187)||(34824260-34824321)
chr3 (116-217)||(45647127-45647228)
chr3 (120-187)||(38750445-38750512)
chr3 (141-182)||(376281-376322)
chr3 (111-146)||(54675326-54675361)
chr3 (113-187)||(12568943-12569017)
chr3 (113-187)||(13545407-13545481)
chr3 (112-149)||(20841227-20841264)
chr3 (116-149)||(25842076-25842109)
chr3 (124-160)||(19578967-19579003)
[»] chr6 (8 HSPs)
chr6 (110-229)||(7972237-7972356)
chr6 (116-229)||(21526905-21527018)
chr6 (122-186)||(6026604-6026668)
chr6 (111-226)||(8049885-8050000)
chr6 (116-159)||(17752206-17752249)
chr6 (138-183)||(8461265-8461310)
chr6 (110-142)||(23923948-23923980)
chr6 (110-142)||(26470958-26470990)
[»] chr5 (15 HSPs)
chr5 (116-229)||(20202207-20202320)
chr5 (116-229)||(17558340-17558453)
chr5 (110-229)||(32717583-32717701)
chr5 (127-229)||(16366089-16366191)
chr5 (133-229)||(36059554-36059650)
chr5 (116-187)||(14655398-14655470)
chr5 (121-217)||(39585343-39585439)
chr5 (128-226)||(17201875-17201973)
chr5 (116-225)||(37270102-37270211)
chr5 (114-217)||(28620581-28620682)
chr5 (116-223)||(248881-248988)
chr5 (118-217)||(1584234-1584333)
chr5 (131-181)||(11825179-11825229)
chr5 (113-142)||(21606489-21606518)
chr5 (110-150)||(43346823-43346863)
[»] chr7 (22 HSPs)
chr7 (116-229)||(39434472-39434586)
chr7 (116-229)||(4962536-4962649)
chr7 (116-229)||(14771015-14771129)
chr7 (116-229)||(15221467-15221581)
chr7 (116-186)||(25291037-25291108)
chr7 (116-230)||(46671618-46671734)
chr7 (110-187)||(39429906-39429983)
chr7 (114-217)||(16197385-16197488)
chr7 (131-230)||(15643676-15643774)
chr7 (123-217)||(33258953-33259047)
chr7 (116-220)||(2271324-2271428)
chr7 (126-182)||(4678952-4679008)
chr7 (112-182)||(27723848-27723918)
chr7 (122-186)||(10534415-10534479)
chr7 (116-183)||(28226884-28226951)
chr7 (116-233)||(24393682-24393799)
chr7 (125-187)||(39599314-39599376)
chr7 (115-217)||(17270144-17270246)
chr7 (125-217)||(4567917-4568009)
chr7 (116-185)||(35792491-35792561)
chr7 (122-160)||(43369138-43369176)
chr7 (117-185)||(2798934-2799003)
[»] chr4 (21 HSPs)
chr4 (114-229)||(38433825-38433940)
chr4 (110-229)||(37371000-37371121)
chr4 (131-229)||(55344105-55344204)
chr4 (126-187)||(24537900-24537961)
chr4 (114-226)||(9808143-9808253)
chr4 (116-186)||(49299306-49299376)
chr4 (115-217)||(9088730-9088832)
chr4 (116-226)||(47943946-47944056)
chr4 (116-217)||(1821057-1821158)
chr4 (113-216)||(17330952-17331055)
chr4 (116-183)||(37209530-37209597)
chr4 (131-226)||(49263594-49263689)
chr4 (116-226)||(19443032-19443142)
chr4 (139-229)||(45634927-45635017)
chr4 (114-179)||(8077786-8077849)
chr4 (132-186)||(53370054-53370108)
chr4 (114-187)||(38044230-38044303)
chr4 (116-149)||(668197-668230)
chr4 (115-148)||(33890207-33890240)
chr4 (116-149)||(49262924-49262957)
chr4 (114-142)||(32239381-32239409)
[»] chr8 (12 HSPs)
chr8 (130-229)||(3443318-3443418)
chr8 (116-187)||(34039444-34039515)
chr8 (114-229)||(9455606-9455720)
chr8 (125-187)||(7577822-7577884)
chr8 (123-187)||(35970069-35970133)
chr8 (112-187)||(3742299-3742373)
chr8 (116-223)||(36683445-36683552)
chr8 (110-164)||(2742529-2742583)
chr8 (115-217)||(29315220-29315322)
chr8 (116-226)||(32234214-32234324)
chr8 (113-149)||(29316036-29316072)
chr8 (196-229)||(2742601-2742634)
[»] scaffold1130 (1 HSPs)
scaffold1130 (116-229)||(752-866)
[»] chr1 (17 HSPs)
chr1 (116-230)||(11237580-11237693)
chr1 (116-229)||(31622763-31622876)
chr1 (115-183)||(1674237-1674305)
chr1 (114-226)||(19270202-19270314)
chr1 (116-187)||(6295177-6295248)
chr1 (122-217)||(36319432-36319527)
chr1 (118-217)||(52415686-52415785)
chr1 (139-182)||(4395537-4395580)
chr1 (139-229)||(2656236-2656326)
chr1 (115-185)||(4671984-4672054)
chr1 (116-234)||(41117505-41117623)
chr1 (114-170)||(23697405-23697461)
chr1 (113-187)||(13254129-13254203)
chr1 (116-217)||(11795449-11795550)
chr1 (126-217)||(1394890-1394981)
chr1 (116-185)||(10430070-10430139)
chr1 (110-151)||(32769594-32769635)
[»] scaffold0006 (2 HSPs)
scaffold0006 (120-229)||(45906-46013)
scaffold0006 (110-157)||(46659-46706)
[»] scaffold0005 (2 HSPs)
scaffold0005 (125-186)||(271850-271911)
scaffold0005 (196-229)||(271926-271959)
[»] scaffold0841 (2 HSPs)
scaffold0841 (116-219)||(3815-3918)
scaffold0841 (116-182)||(5108-5174)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 42758281 - 42758136
Alignment:
Q  11 ttctattttggtttgttaagtttcaaaagtaagacactttagtcatttaaataaaattacaaacattgata-aaaagtatctaaaatttgtaactctacg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||     
T  42758281 ttctattttggtttgttaagtttcaaaagtaagacactttagtcatttaaataaaattacaaacattgataaaaaagtatctaaaatttgtaactccaca 42758182  T
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaatttt 155  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  42758181 aaatattactccctccgttcctttttcagtgtcgttttagaatttt 42758136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 12413100 - 12412986
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  12413100 tacttcctctgttcctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattataccctcattttaa 12413001  T
Q  216 tctactaataatttt 230  Q
    || | ||||| ||||    
T  12413000 tccattaatagtttt 12412986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 12425160 - 12425046
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||    
T  12425160 tacttcctctgttcctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgtatttttgcacacttttttcctattataccctcattttaa 12425061  T
Q  216 tctactaataatttt 230  Q
    || | ||||| ||||    
T  12425060 tccattaatagtttt 12425046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 34424362 - 34424475
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||        |||||||||||| |||||||    
T  34424362 tactccatccgttcctttttaagtgtcgttttaaaattttaacacaaaaatagcgaagtgtatttttacacactttttttctattatacccttattttaa 34424461  T
Q  216 tctactaataattt 229  Q
    || ||| |||||||    
T  34424462 tccactgataattt 34424475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 4958966 - 4959076
Alignment:
Q  119 tccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatct 218  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| |||||||| |||||||| ||||||||        ||||||||||||||||||||||     
T  4958966 tccctccgttcctttttaagtgttgttttagagttttaacactaaaatagcaaagtgtatctttgcacacttttttcctattataccctcattttaatcc 4959065  T
Q  219 actaataattt 229  Q
    |||||||||||    
T  4959066 actaataattt 4959076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 20170898 - 20170999
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||   |||||||||||||||||||||||||        ||||||||||||||||||||    
T  20170898 tactccctccgttcctctttaagtgtcgttttagaatattaacattgaaatagcgaagtgtatttttgcacattttcttcctattataccctcattttaa 20170997  T
Q  216 tc 217  Q
    ||    
T  20170998 tc 20170999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 7485679 - 7485793
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    ||||||||||||||||||| |||   |||||||||||||||||| |||||||||| || |||||||||  |||        ||||||||| |||||||||    
T  7485679 ttactccctccgttcctttgtaaggatcgttttagaattttaactcaaaaatagcaaaatgtatttttagacatttttttcctattatactctcatttta 7485778  T
Q  215 atctactaataattt 229  Q
    |||||||||||||||    
T  7485779 atctactaataattt 7485793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 27747112 - 27747008
Alignment:
Q  123 tccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctacta 222  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |||  |||||||||||         |||||||||||||||||||||| ||||    
T  27747112 tccgttcctttttaagtgtcgttttagaattttaaaacaaaaatagctaagcatatttttgcac--tttttttctattataccctcattttaatccacta 27747015  T
Q  223 ataattt 229  Q
    |||||||    
T  27747014 ataattt 27747008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 33660760 - 33660691
Alignment:
Q  117 actccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  33660760 actccatccgttcctttttaagtgtcgttttagaatattaatacaaaaatagcaaagtgtatttttgcac 33660691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 25713477 - 25713580
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| ||          ||||||||||||||||||||    
T  25713477 tactccttccattcctttttaaatgtcgttttaaaatattaacactaaaataacgaagtgtattttttcagtttttcttcctattataccctcattttaa 25713576  T
Q  216 tcta 219  Q
    ||||    
T  25713577 tcta 25713580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 29408310 - 29408416
Alignment:
Q  111 aatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcat 210  Q
    |||| |||||| | |||||||||||||||||  ||||||||  ||||||| |||||| ||| |||||||||||||||        |||||||||||||||    
T  29408310 aataatactccattcgttcctttttaaatgtttttttagaaaattaacaccaaaataacgatgtgtatttttgcacattttctttctattataccctcat 29408409  T
Q  211 tttaatc 217  Q
    |||||||    
T  29408410 tttaatc 29408416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 42871889 - 42871957
Alignment:
Q  117 actccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgca 185  Q
    ||||||||  ||||||||||| ||||||||||||||  |||||  ||||||||||||||||||||||||    
T  42871889 actccctcatttcctttttaagtgtcgttttagaatactaacatcaaaatagcgaagtgtatttttgca 42871957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 1398120 - 1398005
Alignment:
Q  111 aatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcat 210  Q
    |||| |||||||||||||| ||| ||| |||  ||||||||  ||||||| |||||||||| |||||||||||||||        | |||||||||||||    
T  1398120 aataatactccctccgttcatttgtaagtgtttttttagaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttccaattataccctcat 1398021  T
Q  211 tttaatctactaataa 226  Q
    ||||||| || |||||    
T  1398020 tttaatccaccaataa 1398005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 15508083 - 15507989
Alignment:
Q  123 tccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    ||||||||||||||| ||||||||||| || ||||| | ||||||||||| ||||||||||| ||        |||||||||| |||||||||||    
T  15508083 tccgttcctttttaagtgtcgttttagtatattaacgccaaaatagcgaattgtatttttgctcactttcttcctattataccttcattttaatc 15507989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14541305 - 14541337
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtc 142  Q
    |||||||||||||||||||||||||||||||||    
T  14541305 aaatattactccctccgttcctttttaaatgtc 14541337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 25966054 - 25966018
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttag 149  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25966054 tattactccctccgttcctttttaaatgtctttttag 25966018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 16806023 - 16806090
Alignment:
Q  119 tccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    ||||||| ||||||||||| |||| ||||||||  |||| || ||||||| || ||||||||||||||    
T  16806023 tccctccattcctttttaagtgtctttttagaaaattaaaaccaaaatagtgatgtgtatttttgcac 16806090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 16845304 - 16845371
Alignment:
Q  119 tccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    ||||||| ||||||||||| |||| ||||||||  |||| || ||||||| || ||||||||||||||    
T  16845304 tccctccattcctttttaagtgtctttttagaaaattaaaaccaaaatagtgatgtgtatttttgcac 16845371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 36243499 - 36243565
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    ||||| |||||||  ||||||| |||  ||||||||||||||||| |||||| |||| |||||||||    
T  36243499 tactctctccgtttatttttaagtgtaattttagaattttaacactaaaataacgaaatgtattttt 36243565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 7259285 - 7259404
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca-nnnnnnnnctattataccctcatttta 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||    
T  7259285 tactccctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagcaaagtgtatttttgcacactttttttcctattataccctcatttta 7259384  T
Q  215 atctactaataattttttat 234  Q
    ||| ||||||||||||||||    
T  7259385 atccactaataattttttat 7259404  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 2599699 - 2599583
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctca 209  Q
    ||||| |||||||||||||||||||||| |||| ||||||||  ||||||| |||||||||| |||||||||||||||        ||||||||||||||    
T  2599699 aaatagtactccctccgttcctttttaagtgtctttttagaaaattaacactaaaatagcgatgtgtatttttgcacattttattcctattataccctca 2599600  T
Q  210 ttttaatctactaataa 226  Q
    |||||||| || |||||    
T  2599599 ttttaatccaccaataa 2599583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 16236970 - 16237077
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctca 209  Q
    ||||| |||||||||||||||||||||| |||| ||||||||  |||||||||||||||||| |||||||||| ||||        ||||||||||||||    
T  16236970 aaatagtactccctccgttcctttttaagtgtctttttagaaaattaacacaaaaatagcgatgtgtattttttcacattttcttcctattataccctca 16237069  T
Q  210 ttttaatc 217  Q
    ||||||||    
T  16237070 ttttaatc 16237077  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 21959308 - 21959421
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| | ||||| ||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||||||        ||||||||||||||||||||    
T  21959308 tactcctttcgttcttttttaagtgtcgttttaaaattttaacataaaaataacgaagtgtctttttgcacacctttttcctattataccctcattttaa 21959407  T
Q  216 tctactaataattt 229  Q
    || |||||||||||    
T  21959408 tccactaataattt 21959421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 13779301 - 13779191
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| | ||||||| ||||||||||| |||| |||| |||||| |||||| |||        ||||||||||||||||||||    
T  13779301 tactccctccgttcctttttaattttcgtttt-gaattttaacagaaaa-tagcaaagtgtgtttttggacattttttc-ctattataccctcattttaa 13779205  T
Q  216 tctactaataattt 229  Q
    ||||||||||||||    
T  13779204 tctactaataattt 13779191  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 297073 - 297018
Alignment:
Q  128 tcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg 183  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  297073 tcctttttaagtgtcgttttagaatattaacaccaaaatagcgaagtgtatttttg 297018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 9589391 - 9589325
Alignment:
Q  120 ccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    |||||||||  ||||||| |||| ||||||||| ||||||| |||||||| ||||||||||||||||    
T  9589391 ccctccgtttatttttaagtgtcattttagaatattaacaccaaaatagcaaagtgtatttttgcac 9589325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 25841485 - 25841563
Alignment:
Q  151 attttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataattt 229  Q
    ||||||||||||||||| | |||||||||||||||||        |||||||||||||||||||||  |||||||||||    
T  25841485 attttaacacaaaaataacaaagtgtatttttgcacattttttttctattataccctcattttaattcactaataattt 25841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 27818074 - 27817964
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| ||||||||||||||| |||  ||||||||  |||||||||||||| ||| ||| |||||||||||        |||||||||||| |||||||    
T  27818074 tactccatccgttcctttttaagtgtttttttagaaaattaacacaaaaataacgatgtgcatttttgcacattttattcctattatacccttattttaa 27817975  T
Q  216 tctactaataa 226  Q
    || || |||||    
T  27817974 tccaccaataa 27817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 21933890 - 21933999
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||| ||||||| |||||||||||||  ||  ||  |||||||| |||||||||||||||||        | |||||||||||| |||||    
T  21933890 tactccctccgttcttttttaagtgtcgttttagaaaattttcatgaaaatagcaaagtgtatttttgcacattttcttacgattataccctcaatttaa 21933989  T
Q  216 tctactaata 225  Q
    || |||||||    
T  21933990 tccactaata 21933999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 34824321 - 34824260
Alignment:
Q  126 gttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||||||||| |||||||||||||| || |||| ||| ||| ||||||||||||||||||    
T  34824321 gttcctttttaagtgtcgttttagaatattcacaccaaattagtgaagtgtatttttgcaca 34824260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 45647228 - 45647127
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    ||||| |||||||| ||||||| |||  ||||||||  |||||| ||||||||||| ||||||| |||||||        ||||||||||||||||||||    
T  45647228 tactctctccgttcatttttaagtgtttttttagaaaattaacataaaaatagcgatgtgtattcttgcacattttcttcctattataccctcattttaa 45647129  T
Q  216 tc 217  Q
    ||    
T  45647128 tc 45647127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 38750445 - 38750512
Alignment:
Q  120 ccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||||||||||||||| |||||||||||||  ||  ||  |||||||| |||||||||||||||||    
T  38750445 ccctccgttcctttttaagtgtcgttttagaaaattttcatgaaaatagcaaagtgtatttttgcaca 38750512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 376322 - 376281
Alignment:
Q  141 tcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  376322 tcgttttataatattaacacaaaaatagcgaagtgtattttt 376281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 54675361 - 54675326
Alignment:
Q  111 aatattactccctccgttcctttttaaatgtcgttt 146  Q
    ||||||||||||||||||||||||||| ||||||||    
T  54675361 aatattactccctccgttcctttttaagtgtcgttt 54675326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 12569017 - 12568943
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||||||  ||| ||||||| |||  | || |||| ||||||| ||||||| ||||||||||||||||||    
T  12569017 tattactccctctattcttttttaagtgttctgttggaatattaacaccaaaatagtgaagtgtatttttgcaca 12568943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 13545481 - 13545407
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||||||  ||| ||||||| |||  | || |||| ||||||| ||||||| ||||||||||||||||||    
T  13545481 tattactccctctattcttttttaagtgttctgttggaatattaacaccaaaatagtgaagtgtatttttgcaca 13545407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 20841227 - 20841264
Alignment:
Q  112 atattactccctccgttcctttttaaatgtcgttttag 149  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  20841227 atattactccctccgttcctttttaagtgtcattttag 20841264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 25842109 - 25842076
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttag 149  Q
    |||||||||||||||||||||| |||||||||||    
T  25842109 tactccctccgttcctttttaagtgtcgttttag 25842076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 19579003 - 19578967
Alignment:
Q  124 ccgttcctttttaaatgtcgttttagaattttaacac 160  Q
    |||||||||||||| |||||||||||||| |||||||    
T  19579003 ccgttcctttttaagtgtcgttttagaatattaacac 19578967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 7972237 - 7972356
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctca 209  Q
    ||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||    
T  7972237 aaataatactccctccgtttctttttaagtgacgttttagaattttaacacaaaaataacgaagtgtatttttgcacactttttttctattataccctca 7972336  T
Q  210 ttttaatctactaataattt 229  Q
    |||||||| |||||||||||    
T  7972337 ttttaatccactaataattt 7972356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 21526905 - 21527018
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||        |||||| |||||||||||||    
T  21526905 tactccctccgttcctttttaagtgtcgttttagaattttaaatcaaaaatagcgaagtgtatttttgcacacttttttcctattacaccctcattttaa 21527004  T
Q  216 tctactaataattt 229  Q
    || |||||||||||    
T  21527005 tccactaataattt 21527018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 6026668 - 6026604
Alignment:
Q  122 ctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||    
T  6026668 ctccgttcctttttaagtgtcgttttagaatattaacacaaaaatagcaaagtgtatgtttgcac 6026604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 8050000 - 8049885
Alignment:
Q  111 aatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcat 210  Q
    |||| |||||||||||||||||||||  |||| ||||| ||  ||||||| |||||||||| |||| ||||||||||        |||||||||||||||    
T  8050000 aataatactccctccgttcctttttatgtgtctttttaaaaaattaacaccaaaatagcgatgtgtgtttttgcacattttcttcctattataccctcat 8049901  T
Q  211 tttaatctactaataa 226  Q
    ||| ||| || |||||    
T  8049900 tttgatccaccaataa 8049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 17752206 - 17752249
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaaca 159  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  17752206 tactctctccgttcctttttaaatgtcgttttagaatattaaca 17752249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 8461310 - 8461265
Alignment:
Q  138 atgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg 183  Q
    ||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  8461310 atgtcattttagaatattaacataaaaatagcaaagtgtatttttg 8461265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 23923980 - 23923948
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtc 142  Q
    |||||||||||||||||||||||||||| ||||    
T  23923980 aaatattactccctccgttcctttttaagtgtc 23923948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 26470990 - 26470958
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtc 142  Q
    |||||||||||||||||||||||||||| ||||    
T  26470990 aaatattactccctccgttcctttttaagtgtc 26470958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 20202320 - 20202207
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||    
T  20202320 tactccctccgttcctttttaagtgtcgttttaaaattttaacacaaaaatagctaagtgtatttttgcacatttttttcctattataccctcattttaa 20202221  T
Q  216 tctactaataattt 229  Q
    |  |||||||||||    
T  20202220 ttcactaataattt 20202207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 17558453 - 17558340
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||        |||||||| |||||||||||    
T  17558453 tactccctccgtttttttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgtatttttacacacatttttcctattatatcctcattttaa 17558354  T
Q  216 tctactaataattt 229  Q
    || |||||||||||    
T  17558353 tccactaataattt 17558340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 32717583 - 32717701
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctca 209  Q
    ||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||    
T  32717583 aaatattatcccctctgttcctttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgta-ttttgcacacttttttcctattataccctca 32717681  T
Q  210 ttttaatctactaataattt 229  Q
    | |||||| |||||||||||    
T  32717682 tgttaatccactaataattt 32717701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 16366191 - 16366089
Alignment:
Q  127 ttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataa 226  Q
    |||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||| |        ||||||||||||||||||||||| |||||||    
T  16366191 ttccttttgaagtgtcgtttaagaattttaacacaaaaatagtgaagtgtatttttgcaaacttttttcctattataccctcattttaatcttctaataa 16366092  T
Q  227 ttt 229  Q
    |||    
T  16366091 ttt 16366089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 36059554 - 36059650
Alignment:
Q  133 tttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataattt 229  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||        |||||||||||||||||||||| |||||||||||    
T  36059554 tttaagtgtcgatttagaattttaacacaaaaatagtgaagtgtattttttcacatttttttcctattataccctcattttaatccactaataattt 36059650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 14655470 - 14655398
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaatttt-aacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||| ||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  14655470 tactctctctgttcctttttaaatgtcattttagagtttttaacacaaaaatagcgaagtgtatttttgcaca 14655398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 39585343 - 39585439
Alignment:
Q  121 cctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    ||||||||||||||||| |||| ||||||||  ||||||| |||||||||| |||||||||||||||        ||||||||||||||||||||||    
T  39585343 cctccgttcctttttaagtgtctttttagaaaattaacaccaaaatagcgacgtgtatttttgcacattttcttcctattataccctcattttaatc 39585439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 17201875 - 17201973
Alignment:
Q  128 tcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataa 226  Q
    |||||||||| |||| ||||||||  |||||| ||||||||||| |||||||||||||||        |||||||||||||||||||||| || |||||    
T  17201875 tcctttttaagtgtctttttagaaaattaacataaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaatccaccaataa 17201973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 37270211 - 37270102
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||  ||||||||||| |||||||||||||  ||  |||||||||||| |||||||||||||||||        ||| |||||||||| |||||    
T  37270211 tactccctcgattcctttttaagtgtcgttttagaaaatttccacaaaaatagcaaagtgtatttttgcacattttcttcctactataccctcaatttaa 37270112  T
Q  216 tctactaata 225  Q
    || |||||||    
T  37270111 tccactaata 37270102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 28620682 - 28620581
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||  ||||| ||| ||||||||||||||         ||||||||||||||||||    
T  28620682 attactccctccgttcctttttaagtgtctttttagaaaattaacac--aaataacgatgtgtatttttgcaccttttcttcctattataccctcatttt 28620585  T
Q  214 aatc 217  Q
    ||||    
T  28620584 aatc 28620581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 248881 - 248988
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||| ||||||||||| |||||||||||||  ||  || ||||||||| |||||||||||| ||||        |||||||||||||| |||||    
T  248881 tactccctccattcctttttaagtgtcgttttagaaaatttccataaaaatagcaaagtgtatttttacacattttcttcctattataccctcaatttaa 248980  T
Q  216 tctactaa 223  Q
    || |||||    
T  248981 tccactaa 248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 1584333 - 1584234
Alignment:
Q  118 ctccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    |||||||  ||||||||||| |||| ||||| ||  ||||||| ||| |||||| |||||||||||||||        ||||||||||||||||||||||    
T  1584333 ctccctctattcctttttaagtgtctttttaaaaaattaacaccaaattagcgatgtgtatttttgcacattttctttctattataccctcattttaatc 1584234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 11825179 - 11825229
Alignment:
Q  131 tttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttt 181  Q
    ||||||| |||||||||||||  |||| |||||||||||||||||||||||    
T  11825179 tttttaagtgtcgttttagaaaattaatacaaaaatagcgaagtgtatttt 11825229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 21606518 - 21606489
Alignment:
Q  113 tattactccctccgttcctttttaaatgtc 142  Q
    ||||||||||||||||||||||||||||||    
T  21606518 tattactccctccgttcctttttaaatgtc 21606489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 43346863 - 43346823
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttaga 150  Q
    |||| |||||| |||||||||||||||| ||||||||||||    
T  43346863 aaatgttactctctccgttcctttttaagtgtcgttttaga 43346823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 39434586 - 39434472
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaa-ttttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||        |||||||||||| ||||||    
T  39434586 tactccctccgttcctttttaagtgtcgttttagaatttttaatacaaaaatagcgaagtgtatttttgcacacttttttcctattatacccttatttta 39434487  T
Q  215 atctactaataattt 229  Q
    ||| |||||||||||    
T  39434486 atcgactaataattt 39434472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 4962536 - 4962649
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||| ||||        ||||||||||||||||||||    
T  4962536 tactccctccgttcctttttaagtgccgttttagaattttaacacaaaaatagtgaaatgtattttttcacacttttttcctattataccctcattttaa 4962635  T
Q  216 tctactaataattt 229  Q
    || |||||||||||    
T  4962636 tcaactaataattt 4962649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 14771015 - 14771129
Alignment:
Q  116 tactccctccgttcctttttaaatgtc-gttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||| ||||        |||||||||||||||||||    
T  14771015 tactccctccgttcctttttaagtgtcagttttagaattttaacacaaaaatagtaaagtgtatttttacacactttttctctattataccctcatttta 14771114  T
Q  215 atctactaataattt 229  Q
    ||| |||||||||||    
T  14771115 atccactaataattt 14771129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 15221467 - 15221581
Alignment:
Q  116 tactccctccgttcctttttaaatgtc-gttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||| ||||        |||||||||||||||||||    
T  15221467 tactccctccgttcctttttaagtgtcagttttagaattttaacacaaaaatagtaaagtgtatttttacacactttttctctattataccctcatttta 15221566  T
Q  215 atctactaataattt 229  Q
    ||| |||||||||||    
T  15221567 atccactaataattt 15221581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 25291108 - 25291037
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaa-ttttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25291108 tactccctccgttcctttttaagtgtcgttttagaatttttaacacaaaaatagcgaagtgtatttttgcac 25291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 46671618 - 46671734
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaa-ttttaacacaaaaatagcgaagtgtatttttgcac-annnnnnnnctattataccctcatttt 213  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||| |        ||||||||||||||||||    
T  46671618 tactccctccgttcctttttaagtgtcgttttagaatttttaacacaaaaatagcaaagggtatttttgcacaatttttttcctattataccctcatttt 46671717  T
Q  214 aatctactaataatttt 230  Q
    || | ||||||||||||    
T  46671718 aagccactaataatttt 46671734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 39429906 - 39429983
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||| ||||| |||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  39429906 aaatactactctctccgttcatttttaagtgtcattttataattttaacacaaaaatagcgaagtgtatttttgcaca 39429983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 16197488 - 16197385
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    |||||||||||| ||||||||||| |||| ||||||||  ||||||| ||||||| || |||||||||||||||        ||||||||||||||||||    
T  16197488 attactccctccattcctttttaagtgtctttttagaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattataccctcatttt 16197389  T
Q  214 aatc 217  Q
    ||||    
T  16197388 aatc 16197385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 15643774 - 15643676
Alignment:
Q  131 tttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataatttt 230  Q
    ||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||        | |||||||||||||||||||| ||||||||||||    
T  15643774 tttttaagtgtcgttttagaaatttaacacaaaaatagttaagtgtatttttgcaca-ttttttacgattataccctcattttaatccactaataatttt 15643676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 33259047 - 33258953
Alignment:
Q  123 tccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||| | |        ||||||||||||||||||||||    
T  33259047 tccgttcctttttaagtgtcgttttagaatattaacaccaaaataacgaagtgtatttttgtagattttcttcctattataccctcattttaatc 33258953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 2271324 - 2271428
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    ||||||||||||| |||||||| |||| |||||| |  ||||||| |||||||||| |||||||||||||||        |||||||| |||||||||||    
T  2271324 tactccctccgtttctttttaagtgtctttttaggaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattatatcctcattttaa 2271423  T
Q  216 tctac 220  Q
    |||||    
T  2271424 tctac 2271428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 4679008 - 4678952
Alignment:
Q  126 gttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  4679008 gttcctttttaagtgtcattttataattttaacacaaaaatagcgaagtgtattttt 4678952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 27723918 - 27723848
Alignment:
Q  112 atattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    ||||||||||||||||||||||| || |||||||||||||  ||||||| |||||||||| || |||||||    
T  27723918 atattactccctccgttccttttgaagtgtcgttttagaaaattaacaccaaaatagcgatgtatattttt 27723848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 10534415 - 10534479
Alignment:
Q  122 ctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    ||||||||||||||||||||| ||||||||  ||||||| |||||| ||| ||||||||||||||    
T  10534415 ctccgttcctttttaaatgtctttttagaaaattaacaccaaaataacgatgtgtatttttgcac 10534479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 28226951 - 28226884
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg 183  Q
    |||||||||||||| ||||||| ||||||||| |||| ||||||| ||| |||||| |||||||||||    
T  28226951 tactccctccgttcatttttaagtgtcgttttggaatattaacaccaaattagcgatgtgtatttttg 28226884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 24393682 - 24393799
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgc-acannnnnnnnctattataccctcatttta 214  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||| ||||||  |||||||||||| || | |        | |||||||| ||||||||    
T  24393682 tactccctccgtttctttttaagtgtcgttttagaaatttaacac-aaaataatgaagtgtattttcgcaaaaaacaattccaattataccgtcatttta 24393780  T
Q  215 atctactaataatttttta 233  Q
    ||| |||||||||||||||    
T  24393781 atccactaataatttttta 24393799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 39599314 - 39599376
Alignment:
Q  125 cgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||| |||||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||    
T  39599314 cgttcttttttaaatgtcgtttaagaatattaacacgaaattagcgaagtgaatttttgcaca 39599376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 17270246 - 17270144
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    ||||||||| ||||||||||||| |||||||||||||  |||| || ||||||  ||||||| ||||| ||||        ||||||||| |||||||||    
T  17270246 ttactcccttcgttcctttttaagtgtcgttttagaaaattaataccaaaataatgaagtgtgtttttacacattttttccctattatactctcatttta 17270147  T
Q  215 atc 217  Q
    |||    
T  17270146 atc 17270144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 4568009 - 4567917
Alignment:
Q  125 cgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    |||| ||||||||||||| ||||||||  ||||||  ||||||||| ||||||||||| |||         ||||||||||||||||||||||    
T  4568009 cgtttctttttaaatgtctttttagaaaattaacatcaaaatagcgcagtgtatttttacacgttatctttctattataccctcattttaatc 4567917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 35792491 - 35792561
Alignment:
Q  116 tactccctccgttcctttttaaatg-tcgttttagaattttaacacaaaaatagcgaagtgtatttttgca 185  Q
    ||||||||||||||||| |||  || |  ||||||||  |||||||||||||||||| |||||||||||||    
T  35792491 tactccctccgttccttcttatgtgttttttttagaaaattaacacaaaaatagcgatgtgtatttttgca 35792561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 43369176 - 43369138
Alignment:
Q  122 ctccgttcctttttaaatgtcgttttagaattttaacac 160  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  43369176 ctccgttcctttttaagtgtcgttttagaatattaacac 43369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 2799003 - 2798934
Alignment:
Q  117 actccctccgttccttt-ttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgca 185  Q
    ||||||||||||  ||| ||||||||||||||  ||| ||||||| ||| ||| ||||||||||||||||    
T  2799003 actccctccgtttttttcttaaatgtcgttttgaaatattaacaccaaattagtgaagtgtatttttgca 2798934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 38433825 - 38433940
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| |        ||||||||||||||||||    
T  38433825 attactccattcgttcctttttaagtgtcgttttaaaattttaacacaaaaatagcgaagtatatttttgcaaacttttttcctattataccctcatttt 38433924  T
Q  214 aatctactaataattt 229  Q
    |||| |||||||||||    
T  38433925 aatccactaataattt 38433940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 37371000 - 37371121
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg--cacannnnnnnnctattataccct 207  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||         ||||||||||||    
T  37371000 aaataatactccatccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgtatttttgaacactttttttttctattataccct 37371099  T
Q  208 cattttaatctactaataattt 229  Q
    || ||||||| |||||||||||    
T  37371100 caatttaatccactaataattt 37371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 55344204 - 55344105
Alignment:
Q  131 tttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnc-tattataccctcattttaatctactaataattt 229  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||        | ||||||||||||||||||||| |||||||||||    
T  55344204 tttttaagtgtcgttttagaattttaacacaaaaatagcgaaatgtatttttgcacattttttttcatattataccctcattttaatccactaataattt 55344105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 24537900 - 24537961
Alignment:
Q  126 gttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24537900 gttcctttttaagtgtcgttttagaattttaacataaaaatagcgaagtgtatttttgcaca 24537961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 9808253 - 9808143
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||||| |||||||||| |||||||||| ||||        |||||||| |||||||||    
T  9808253 attactccctccgttcctttttaaatgtc-ttttagaaaattaacaccaaaatagcgatgtgtattttt-cacattttcttcctattatatcctcatttt 9808156  T
Q  214 aatctactaataa 226  Q
    |||| ||||||||    
T  9808155 aatccactaataa 9808143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 49299306 - 49299376
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    ||||||||||| |||||||||| |||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  49299306 tactccctccgctcctttttaagtgtctttttagaaaattaacacaaaaatagcgatgtgtatttttgcac 49299376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 9088730 - 9088832
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    |||||| |||||||||||||||| | || ||||||||  ||||||| |||||||||| ||||||| |||||||        |||||||||||||||||||    
T  9088730 ttactctctccgttcctttttaagtatctttttagaacattaacactaaaatagcgatgtgtattcttgcacattttcttcctattataccctcatttta 9088829  T
Q  215 atc 217  Q
    |||    
T  9088830 atc 9088832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 47943946 - 47944056
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||| ||||||| ||| |||| ||||| ||  ||||||| |||||||||| |||||||||||||||        ||||||||||||||||||||    
T  47943946 tactccctccattcctttgtaagtgtctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaa 47944045  T
Q  216 tctactaataa 226  Q
    || || |||||    
T  47944046 tccaccaataa 47944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 1821057 - 1821158
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||  ||||||||||| |||| ||||| ||  ||||||| |||||||||| |||||||||||||||        ||||||||||||||||||||    
T  1821057 tactccctctattcctttttaagtgtctttttaaaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattataccctcattttaa 1821156  T
Q  216 tc 217  Q
    ||    
T  1821157 tc 1821158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 17331055 - 17330952
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattt 212  Q
    ||||||| |||||||||||||| || |||| ||||||||  ||||||| |||||||| | |||||||||||||||        |||||||||||| ||||    
T  17331055 tattacttcctccgttccttttgaagtgtctttttagaaaattaacaccaaaatagcaatgtgtatttttgcacattttcttcctattataccctaattt 17330956  T
Q  213 taat 216  Q
    ||||    
T  17330955 taat 17330952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 37209530 - 37209597
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg 183  Q
    |||||||||||||||||||||| |||| ||||||||  ||| ||| |||||||||| |||||||||||    
T  37209530 tactccctccgttcctttttaagtgtctttttagaaaattaccaccaaaatagcgatgtgtatttttg 37209597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 49263689 - 49263594
Alignment:
Q  131 tttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataa 226  Q
    ||||||| |||| ||||||||  ||||||| ||||||||||||||||||||||||||        |||||| ||||| ||||||||| ||||||||    
T  49263689 tttttaagtgtctttttagaaaattaacaccaaaatagcgaagtgtatttttgcacattttcttcctattagaccctgattttaatccactaataa 49263594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 19443032 - 19443142
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| |||| ||||||||  |||| || || ||| ||| || ||||||||||||        ||||||||||||||||||||    
T  19443032 tactccctccgttcctttttaagtgtctttttagaaaattaataccaagataacgatgtatatttttgcacattttcttcctattataccctcattttaa 19443131  T
Q  216 tctactaataa 226  Q
    || || |||||    
T  19443132 tccaccaataa 19443142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 45634927 - 45635017
Alignment:
Q  139 tgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataattt 229  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||| |||        |||||||||||||||||||||| |||| ||||||    
T  45634927 tgtcgttttagtatttgaacacaaaaatagcgaactgcatttttgtacatatttttactattataccctcattttaatccactactaattt 45635017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 8077786 - 8077849
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatt 179  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||  ||| |||||||||| ||||||    
T  8077786 attactccatccattcctttttaagtgtcgttttagaatttta--acataaatagcgaattgtatt 8077849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 53370054 - 53370108
Alignment:
Q  132 ttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    |||||||||||||||| |||| ||||||||||||||   ||||||||||||||||    
T  53370054 ttttaaatgtcgtttttgaatattaacacaaaaataataaagtgtatttttgcac 53370108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 38044230 - 38044303
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||||||||| |||||||| |||  ||||| ||  |||||| ||||||||| | |||||||||||||||    
T  38044230 attactccctccgtttctttttaagtgtttttttaaaaaattaacataaaaatagcaatgtgtatttttgcaca 38044303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 668230 - 668197
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttag 149  Q
    |||||||||||||||||||||| |||||||||||    
T  668230 tactccctccgttcctttttaagtgtcgttttag 668197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 33890240 - 33890207
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgtttta 148  Q
    ||||||||||||||||||||||| ||||||||||    
T  33890240 ttactccctccgttcctttttaagtgtcgtttta 33890207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 49262924 - 49262957
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttag 149  Q
    ||||||||||||||||||||||||||| ||||||    
T  49262924 tactccctccgttcctttttaaatgtctttttag 49262957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 32239381 - 32239409
Alignment:
Q  114 attactccctccgttcctttttaaatgtc 142  Q
    |||||||||||||||||||||||||||||    
T  32239381 attactccctccgttcctttttaaatgtc 32239409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 3443318 - 3443418
Alignment:
Q  130 ctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca-nnnnnnnnctattataccctcattttaatctactaataatt 228  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| ||||||||||    
T  3443318 ctttttaagcgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacactttttttcctattataccctcattttaatccactaataatt 3443417  T
Q  229 t 229  Q
    |    
T  3443418 t 3443418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 34039515 - 34039444
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  34039515 tactccctcctttcctttttaaatgtcgttttagaattttaacacaaaaataatgaagtgtatttttacaca 34039444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 9455720 - 9455606
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    |||| |||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||    
T  9455720 attattccctccgtttctttttaagtgtcattttaaaattttaacacaaaaatagcaaagtgtatttttgcaca-cttttttctattataccctcatttt 9455622  T
Q  214 aatctactaataattt 229  Q
    |||  |||||||||||    
T  9455621 aatacactaataattt 9455606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 7577822 - 7577884
Alignment:
Q  125 cgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  7577822 cgttcctttttaagcgtcgttttagaattttaacataaaaatagctaagtgtatttttgcaca 7577884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 35970069 - 35970133
Alignment:
Q  123 tccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||||||||| | |||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  35970069 tccgttcctttttaactatcgttttagaatattaacaccaaattagcaaagtgtatttttgcaca 35970133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 3742373 - 3742299
Alignment:
Q  112 atattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||||| |||||||||||| ||||||||||| |||  ||  |||||||||| | |||||||||||||||||    
T  3742373 atattactccc-ccgttccttttttaatgtcgttttcgaaaatttccacaaaaataacaaagtgtatttttgcaca 3742299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 36683552 - 36683445
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    ||||||||||||||| |||||| ||| |||||||||  ||  ||  |||||||| |||||||||||||||||        |||||||||||||| |||||    
T  36683552 tactccctccgttcccttttaagtgttgttttagaaaatttccatgaaaatagcaaagtgtatttttgcacattttcttcctattataccctcaatttaa 36683453  T
Q  216 tctactaa 223  Q
    || |||||    
T  36683452 tcgactaa 36683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 2742529 - 2742583
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaa 164  Q
    ||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||    
T  2742529 aaataatactccctccgttctttttgaagagtcgttttagaattttaacacaaaa 2742583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 29315220 - 29315322
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttta 214  Q
    ||||||||||||||| ||||||| |||||||||||||  ||  ||  |||||||| |||||||| ||||||||        |||||||||||||| ||||    
T  29315220 ttactccctccgttcttttttaagtgtcgttttagaaaatttccatgaaaatagcaaagtgtatatttgcacattttcttcctattataccctcaattta 29315319  T
Q  215 atc 217  Q
    |||    
T  29315320 atc 29315322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 32234324 - 32234214
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||||||||||||||| |||  ||||||||  || |||  |||||||||| ||||||||||| |||        ||||||||||||||||| ||    
T  32234324 tactccctccgttcctttttaagtgtttttttagaaaatttacatcaaaatagcgatgtgtatttttgtacattttcttcctattataccctcatttcaa 32234225  T
Q  216 tctactaataa 226  Q
    || || |||||    
T  32234224 tccaccaataa 32234214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 29316072 - 29316036
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttag 149  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29316072 tattactccctccgttcctttttaagtgtcgttttag 29316036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 2742601 - 2742634
Alignment:
Q  196 ctattataccctcattttaatctactaataattt 229  Q
    |||||||||||||||||||||| |||||||||||    
T  2742601 ctattataccctcattttaatccactaataattt 2742634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 866 - 752
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca-nnnnnnnnctattataccctcatttta 214  Q
    |||||||||||||||||||||| |||||||||| |||||||||| |||||||   |||||||||||||||||         |||||||||||||| ||||    
T  866 tactccctccgttcctttttaagtgtcgttttataattttaacataaaaataaaaaagtgtatttttgcacactttttttcctattataccctcaattta 767  T
Q  215 atctactaataattt 229  Q
    |||||||||||||||    
T  766 atctactaataattt 752  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 11237580 - 11237693
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||          |||||||||| |||||||||    
T  11237580 tactccctccgttactttttaagtgtcgttttagaattataacacaaaaatagtgaagtgtatttttgca-ttttttttcctattataccatcattttaa 11237678  T
Q  216 tctactaataatttt 230  Q
    || ||||||||||||    
T  11237679 tccactaataatttt 11237693  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 31622763 - 31622876
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| ||||||||||||||| |||| || |||||||||| |||||||||| |||||||||||||||||||        ||||||| |||||||||||     
T  31622763 tactccatccgttcctttttaagtgtcattctagaattttagcacaaaaataacgaagtgtatttttgcacatttttctcctattattccctcattttac 31622862  T
Q  216 tctactaataattt 229  Q
    || |||||||||||    
T  31622863 tccactaataattt 31622876  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 1674237 - 1674305
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttg 183  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  1674237 ttactccctccgttcttttttaagtgtcgttttagaattttaacacaaaaataacaaagtgtatttttg 1674305  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 19270314 - 19270202
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcatttt 213  Q
    |||||| ||||||||||||||||| |||||||||  ||| ||||||| ||| |||||||||||||| |||||||         |||||||||||||||||    
T  19270314 attactacctccgttcctttttaagtgtcgttttgaaatattaacaccaaattagcgaagtgtattattgcacatttttgtcttattataccctcatttt 19270215  T
Q  214 aatctactaataa 226  Q
    |||| || |||||    
T  19270214 aatccaccaataa 19270202  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 6295177 - 6295248
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    |||||| | |||||||||||||||||| ||||||||  ||||||| |||||||||| |||||||||||||||    
T  6295177 tactccgtacgttcctttttaaatgtctttttagaaaattaacactaaaatagcgatgtgtatttttgcaca 6295248  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 36319432 - 36319527
Alignment:
Q  122 ctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    |||||||||||||||| | || ||||||||  |||||||||||||||||| |||||||||||||||        ||||||||| ||||||||||||    
T  36319432 ctccgttcctttttaagtatctttttagaaaattaacacaaaaatagcgatgtgtatttttgcacattttcttcctattatactctcattttaatc 36319527  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 52415785 - 52415686
Alignment:
Q  118 ctccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    |||||||||||||||||||| |||||||||||||  ||| ||| |||||||| |||||||||||| ||||        |||||||||||||| |||||||    
T  52415785 ctccctccgttcctttttaagtgtcgttttagaaaattaccacgaaaatagcaaagtgtatttttacacattttcttcctattataccctcaatttaatc 52415686  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 4395537 - 4395580
Alignment:
Q  139 tgtcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4395537 tgtcgttttggaattttaacacaaaaatagcgaagtgtattttt 4395580  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 2656326 - 2656236
Alignment:
Q  139 tgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatctactaataattt 229  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||| |||        |||||||||||||||||||||| |||| ||||||    
T  2656326 tgtcgttttagtatttgaacacaaaaatagcgaactgcatttttgtacatatttttactattataccctcattttaatccactactaattt 2656236  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 4672054 - 4671984
Alignment:
Q  115 ttactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgca 185  Q
    ||||||||||||||| ||||||| |||||||||||||  ||  ||| |||||||| |||||||||||||||    
T  4672054 ttactccctccgttcttttttaagtgtcgttttagaaaatttccacgaaaatagcaaagtgtatttttgca 4671984  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 41117623 - 41117505
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||||||| ||| ||||||| |||| ||||||||  ||||||| ||| |||||| |||||||||||||          ||||||||||||||||||||    
T  41117623 tactccctccattcttttttaagtgtctttttagaaaattaacaccaaactagcgatgtgtatttttgcattttttttttctattataccctcattttaa 41117524  T
Q  216 tctactaataattttttat 234  Q
    || || ||||| |||||||    
T  41117523 tccaccaataaatttttat 41117505  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 23697405 - 23697461
Alignment:
Q  114 attactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcg 170  Q
    |||||||||||| ||| ||||||  |||||||||| |||||||||||||||||||||    
T  23697405 attactccctccattcatttttaggtgtcgttttaaaattttaacacaaaaatagcg 23697461  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 13254129 - 13254203
Alignment:
Q  113 tattactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcaca 187  Q
    ||||||||| |||||||||||||||  ||  ||||||||  ||||||  |||||||||| |||||||||||||||    
T  13254129 tattactccatccgttcctttttaagcgtttttttagaaaattaacatcaaaatagcgatgtgtatttttgcaca 13254203  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 11795449 - 11795550
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||| |||| ||| |||||||| |||||||||||||| ||||| | ||||||  |||| |||||||||||||         |||||||||||||||||||    
T  11795449 tacttcctctgtttctttttaagtgtcgttttagaatattaacgctaaaatattgaagagtatttttgcacattttcttcatattataccctcattttaa 11795548  T
Q  216 tc 217  Q
    ||    
T  11795549 tc 11795550  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 1394981 - 1394890
Alignment:
Q  126 gttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatc 217  Q
    |||||||||||| |||||||||||||| || |||  ||| ||| ||||||||||||| ||||        |||| |||||||||||||||||    
T  1394981 gttcctttttaagtgtcgttttagaatattcacatcaaattagtgaagtgtattttttcacattttctttctatcataccctcattttaatc 1394890  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 10430070 - 10430139
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgca 185  Q
    |||| ||||||||| ||||||| ||| ||||| |||| ||||||  ||| |||| |||||||||||||||    
T  10430070 tacttcctccgttcttttttaagtgttgttttggaatattaacatcaaattagcaaagtgtatttttgca 10430139  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 32769635 - 32769594
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaa 151  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  32769635 aaatagtactccctccattcctttttaagtgtcgttttagaa 32769594  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 45906 - 46013
Alignment:
Q  120 ccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaatcta 219  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||   || ||||||||||||||        ||||| |||||||| |||||||||    
T  45906 ccctcctttcctttttaagtgtcgttttagaattttaacaaaaaaata--aaaatgtatttttgcacacttttttcctattgtaccctcaatttaatcta 46003  T
Q  220 ctaataattt 229  Q
    | ||||||||    
T  46004 cgaataattt 46013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 46706 - 46659
Alignment:
Q  110 aaatattactccctccgttcctttttaaatgtcgttttagaattttaa 157  Q
    ||||| |||||||||||||||||||||| ||||||||| | |||||||    
T  46706 aaatagtactccctccgttcctttttaactgtcgttttggtattttaa 46659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 271850 - 271911
Alignment:
Q  125 cgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcac 186  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  271850 cgtttctttttaagtgtcgttttagaattttaacacagaaatagcaaagtgtaattttgcac 271911  T

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Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 271926 - 271959
Alignment:
Q  196 ctattataccctcattttaatctactaataattt 229  Q
    |||||||||||||||||||||| |||||||||||    
T  271926 ctattataccctcattttaatccactaataattt 271959  T

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Target: scaffold0841 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 3815 - 3918
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtatttttgcacannnnnnnnctattataccctcattttaa 215  Q
    |||||| ||| ||| |||||||||||||||||| ||| ||||||| |||||| |||||||||||||| ||          ||||||||||||||||||||    
T  3815 tactccttccattcatttttaaatgtcgttttaaaatattaacactaaaataacgaagtgtattttttcagtttttcttcctattataccctcattttaa 3914  T
Q  216 tcta 219  Q
    ||||    
T  3915 tcta 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 5174 - 5108
Alignment:
Q  116 tactccctccgttcctttttaaatgtcgttttagaattttaacacaaaaatagcgaagtgtattttt 182  Q
    |||||| ||| ||| |||||||||||||||||| ||| ||||||| |||||| | |||| |||||||    
T  5174 tactccttccattcttttttaaatgtcgttttaaaatattaacactaaaataacaaagtatattttt 5108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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