View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_28 (Length: 242)
Name: NF2505_low_28
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 835139 - 835373
Alignment:
| Q |
22 |
ctccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgt |
121 |
Q |
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| T |
835139 |
ctccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgt |
835238 |
T |
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| Q |
122 |
tctgcacaatgattggtattgatacctagca----------------taacaaatagtactattagtaatatattgctcctctcaatcactaatacatgg |
205 |
Q |
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| T |
835239 |
tctgcacaatgattggtattgatacctagcatacctaaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatacatgg |
835338 |
T |
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| Q |
206 |
aatgaatttgtaattcttacatctactggcctttg |
240 |
Q |
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| T |
835339 |
aatgaatttgtaattcttacatctactggcctttg |
835373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
35 |
ttgccataatttcaaattggttgattctggatatatgagttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
133 |
Q |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
134 |
ttggtat |
140 |
Q |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 813597 - 813628
Alignment:
| Q |
200 |
acatggaatgaatttgtaattcttacatctac |
231 |
Q |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctac |
813628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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