View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_36 (Length: 236)
Name: NF2505_low_36
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_36 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 115880 - 116097
Alignment:
| Q |
19 |
cacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagg |
118 |
Q |
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| T |
115880 |
cacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagg |
115979 |
T |
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| Q |
119 |
aaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgt |
218 |
Q |
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| T |
115980 |
aaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgt |
116079 |
T |
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| Q |
219 |
tgttatggtggataggtc |
236 |
Q |
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| T |
116080 |
tgttatggtggataggtc |
116097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 177901 - 177690
Alignment:
| Q |
25 |
atccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaact |
124 |
Q |
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| T |
177901 |
atccaacaatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagct |
177802 |
T |
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| Q |
125 |
ttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgttgttat |
224 |
Q |
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| T |
177801 |
ttgtagttaattaaatcatttttttcttctatgcgattccaaaaaaaatgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttat |
177702 |
T |
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| Q |
225 |
ggtggataggtc |
236 |
Q |
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| T |
177701 |
ggtggataggtc |
177690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 606512 - 606380
Alignment:
| Q |
104 |
tcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcattt |
203 |
Q |
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| T |
606512 |
tcttcttgttcaaggaaagttttgtagttcattaaatcacttttttggtctaggcgattccaaaagaaatgaaaatatctctgtttgtgttcttgcatat |
606413 |
T |
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| Q |
204 |
cctcaagtctttcgttgttatggtggataggtc |
236 |
Q |
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| T |
606412 |
cctcatgtgttttgttgctatggtggataggtc |
606380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 10273 - 10490
Alignment:
| Q |
20 |
acagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagga |
119 |
Q |
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| T |
10273 |
acagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaa |
10372 |
T |
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| Q |
120 |
aaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctt---tc |
216 |
Q |
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| T |
10373 |
attctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatgtttgtattcttgcatttcctcaagttttttgtt |
10472 |
T |
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| Q |
217 |
gttgttatggtggatagg |
234 |
Q |
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| T |
10473 |
gttgttatggtggatagg |
10490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 23727 - 23944
Alignment:
| Q |
20 |
acagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagga |
119 |
Q |
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||||||||||| |||||||| ||||||| ||| ||| || ||||||| ||| ||||||||||||||||||||||| || || |||||||||||||| | |
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| T |
23727 |
acagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaa |
23826 |
T |
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| Q |
120 |
aaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctt---tc |
216 |
Q |
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| T |
23827 |
attctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatgtttgtattcttgcatttcctcaagttttttgtt |
23926 |
T |
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| Q |
217 |
gttgttatggtggatagg |
234 |
Q |
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| T |
23927 |
gttgttatggtggatagg |
23944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 37438553 - 37438640
Alignment:
| Q |
60 |
tgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
147 |
Q |
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| T |
37438553 |
tgatatttgagaatttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatcactttt |
37438640 |
T |
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