View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_39 (Length: 228)
Name: NF2505_low_39
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 31524430 - 31524578
Alignment:
| Q |
11 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
110 |
Q |
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| T |
31524430 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
31524529 |
T |
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| Q |
111 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524530 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
31524578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 33367070 - 33366922
Alignment:
| Q |
11 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33367070 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
33366971 |
T |
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| Q |
111 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33366970 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
33366922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 49194388 - 49194536
Alignment:
| Q |
11 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49194388 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
49194487 |
T |
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| Q |
111 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194488 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
49194536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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