View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_4 (Length: 521)
Name: NF2505_low_4
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 6551454 - 6550956
Alignment:
| Q |
18 |
aaagacatagcagattagccaacaattttcacagtaaactttagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaac |
117 |
Q |
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| T |
6551454 |
aaagacatagtagattagccaacaattttcacagtaaactttagcataaaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaac |
6551355 |
T |
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| Q |
118 |
ttgagaaaaggctgctttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatgacataacaa |
217 |
Q |
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| T |
6551354 |
ttgagaaaaggctgctttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatgacataacaa |
6551255 |
T |
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| Q |
218 |
agtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaacgcatgtctat------gactttatttctgcacaattataacaagaatc |
311 |
Q |
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| T |
6551254 |
agtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatgactatgactttatttctgcacaatcataacaagaatc |
6551155 |
T |
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| Q |
312 |
ttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattgagatttag |
411 |
Q |
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| T |
6551154 |
ttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattgagatttag |
6551055 |
T |
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| Q |
412 |
atatgttcaaaataacataaatattatgaaacagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatataacgaaatgcaatagaa |
510 |
Q |
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| T |
6551054 |
atatgttcaaaataacatatatattatgaaacagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatacaacgaaatgcaatagaa |
6550956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 49061459 - 49061582
Alignment:
| Q |
18 |
aaagacatagcagattagccaacaattttcacagtaaactttagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaac |
117 |
Q |
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|||||||||||| ||||| ||| | |||| ||| ||||||||||||||||||||| |||||||||| || |||| |||| ||||||||||| |||||| |
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| T |
49061459 |
aaagacatagcatattagtcaatagttttgacaagaaactttagcatacaattttgaaaagaaaacttacgtttcctgctaaacaaatctgatggagaac |
49061558 |
T |
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| Q |
118 |
ttgagaaaaggctgctttcgtgcc |
141 |
Q |
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| T |
49061559 |
ttgagaagagactactttcgtgcc |
49061582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 49061675 - 49061751
Alignment:
| Q |
205 |
catgacataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaacgcatgtctatga |
281 |
Q |
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| T |
49061675 |
catggcataacaaagtcaaagaataattggatgtaccgtttttaccaacaaactagagcatcaatgcatgtatatga |
49061751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 1497540 - 1497500
Alignment:
| Q |
423 |
ataacataaatattatgaaacagaaacaagcgaattaaaac |
463 |
Q |
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| T |
1497540 |
ataacataaatattatgaaattgaaacaagcaaattaaaac |
1497500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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