View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_low_7 (Length: 424)
Name: NF2505_low_7
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 407
Target Start/End: Complemental strand, 25094759 - 25094361
Alignment:
| Q |
9 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataattggcgaaatgtttgcttcacgtaagtttgctctcatatatgcccct |
108 |
Q |
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| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataactggcgaaatgtttgcttcacgtaagtttgctctcatatatgcccct |
25094660 |
T |
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| Q |
109 |
taattgaaaacacttcaaatgtgtttattcttccttcatttccttgagtggtgtttaatagggatggaattcatctgacatccgagggtagcaagatagt |
208 |
Q |
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| T |
25094659 |
taattgaaaaaacttcaaatgtgtttattcttccttcatttccttgagtggtgtttgatagggatggaattcatctgacatctgagggtagcaagatagt |
25094560 |
T |
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| Q |
209 |
tgtgaaagagatacttaatatcctccaagaagcggaatgggaaccttgcttgcactggaagtcactgccaaatgaatttggagaagattcaccttacgat |
308 |
Q |
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| T |
25094559 |
tgtgaaagagatacttaatatcctcaaagaagcagattgggaaccttgcttgcactggaagtcactgccagatgaatttggagaagattcaccttacgat |
25094460 |
T |
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| Q |
309 |
ccgcttggcccagatgaaaaaaccttgaatgtttccagcttgacctttatggaaaccatggaatatgactgatgtgcatttgggagctaaagacatgcc |
407 |
Q |
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| T |
25094459 |
ccgcttggcccagatgaaaaaaccttgaatgtttccagcttgacctttatggaaaccatggaatatgactgatgtgcatttgggagctaaagacatgcc |
25094361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 25071382 - 25071301
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataattggcgaaatgtttgcttcacgtaagt |
88 |
Q |
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| T |
25071382 |
gtgagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagt |
25071301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 25062679 - 25062588
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataattggcgaaatgtttgcttcacgtaagtttgctctcat |
98 |
Q |
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|||||||||| || |||| ||||||| ||||||||||||| || ||||| ||| ||||| || ||||||| |||| |||||| || |||||| |
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| T |
25062679 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
25062588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 25084288 - 25084219
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataattggcgaaatgtttg |
76 |
Q |
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| T |
25084288 |
gtgagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttg |
25084219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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