View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2506_high_10 (Length: 222)
Name: NF2506_high_10
Description: NF2506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2506_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 20743881 - 20744045
Alignment:
| Q |
37 |
taaagtttatgcaagttaaaggaactcacgatggggtcaggcacttcatatttgtagacatgataatgtggcccagaatataatatgtaatattcttacc |
136 |
Q |
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| T |
20743881 |
taaagtttatgcaagttaaaggaactcacggtggggtcaggcacttcatatttgtagacttgataatgtggcccagaatataatatctaatattcttacc |
20743980 |
T |
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| Q |
137 |
aactgagtcaagatcaaagacttctaagtcaannnnnnnattaatgtactcatagaaaataaatatgt |
204 |
Q |
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| T |
20743981 |
aactgagttaagatcaaagagttctaagtcaattttt---ttaatgtactcatagaaaataaatatgt |
20744045 |
T |
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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 1475317 - 1475221
Alignment:
| Q |
18 |
gacacaacaataacagtcgtaaagtttatgcaagttaaaggaactcacgatggggtcaggcacttcatatttgtagacatgataatgtggcccagaa |
114 |
Q |
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| T |
1475317 |
gacacaacaataacagtcataaagtttatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgataatgtggcccagaa |
1475221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 46471637 - 46471566
Alignment:
| Q |
24 |
acaataacagtcgtaaagtttatgcaagttaaaggaactcacgatggggtcaggcacttcatatttgtagac |
95 |
Q |
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| T |
46471637 |
acaataccattcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagac |
46471566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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