View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2506_low_2 (Length: 446)
Name: NF2506_low_2
Description: NF2506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2506_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 13151936 - 13152360
Alignment:
| Q |
18 |
gttacaggatcaaaacaagacaaccaatttattt---atatacataaagagagcaaccataattatataattaagtgtcaccctttcttaaaacaaaatt |
114 |
Q |
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| T |
13151936 |
gttacaagatcaaaacaagacaaccattttatttcagatatacataaagagagcaaccttaattatataattaagtgtcaccctttcttaaaacaaaatt |
13152035 |
T |
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| Q |
115 |
aaatgtcactcttaagaggaaaagacacattaaacaaattagtaccatcaattttcccctgaaatccaaatggatactttttctgtttattaggataaaa |
214 |
Q |
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| T |
13152036 |
aaatgtcactcttaagaggaaaagacacattaaacaaattagtaccatcaattttcccctgaaatccaaatggatactttttctgtttattaggataaaa |
13152135 |
T |
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| Q |
215 |
cactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatccaaatatataagtctcaataggtccagacctcattggtgtcccacct |
314 |
Q |
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| T |
13152136 |
cactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatccaaatatataagtctcaataggtccagacctcattggtgtcccacct |
13152235 |
T |
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| Q |
315 |
ttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagttgcaaatccaccatctgaaggccaaccactctcagacacaacaacct |
414 |
Q |
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| T |
13152236 |
ttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagttgcaaatccaccatctgaaggccaaccactctcagacacaacaacct |
13152335 |
T |
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| Q |
415 |
taacaaaaccaattccagtattatc |
439 |
Q |
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| T |
13152336 |
taacaaaaccaattccagtattatc |
13152360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 171 - 436
Target Start/End: Original strand, 13145325 - 13145593
Alignment:
| Q |
171 |
ccctgaaatccaaatggatactttttctgtttatta---ggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatc |
267 |
Q |
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| T |
13145325 |
ccctaaaatccaaatggatactttttctgtttattattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacaacc |
13145424 |
T |
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| Q |
268 |
caaatatataagtctcaataggtccagacctcattggtgtcccacctttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagt |
367 |
Q |
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| T |
13145425 |
caaatatataagtctcaataggtccagacctcattggtgttccaccattaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagc |
13145524 |
T |
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| Q |
368 |
tgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccagtatt |
436 |
Q |
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| T |
13145525 |
tgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccagtatt |
13145593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 13161141 - 13161053
Alignment:
| Q |
176 |
aaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca |
264 |
Q |
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| T |
13161141 |
aaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
13161053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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