View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2506_low_3 (Length: 427)
Name: NF2506_low_3
Description: NF2506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2506_low_3 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 10359682 - 10360073
Alignment:
| Q |
9 |
agcataggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacat |
108 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10359682 |
agcagaggttgtaagaatttcggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgactt |
10359781 |
T |
|
| Q |
109 |
ata-----------------agct---aaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactt |
188 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10359782 |
atacagcaaggaagttttttagcttgtaaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactt |
10359881 |
T |
|
| Q |
189 |
tcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatat |
288 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10359882 |
tctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatat |
10359980 |
T |
|
| Q |
289 |
aggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10359981 |
aggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgt |
10360073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 120 - 381
Target Start/End: Complemental strand, 9981444 - 9981184
Alignment:
| Q |
120 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
9981444 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc |
9981346 |
T |
|
| Q |
220 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat |
319 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9981345 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat |
9981246 |
T |
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| Q |
320 |
tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgt |
381 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9981245 |
tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgt |
9981184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 10130816 - 10130686
Alignment:
| Q |
249 |
attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag |
348 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10130816 |
atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag |
10130717 |
T |
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| Q |
349 |
cattcatttaaaattacaaattaagaatcac |
379 |
Q |
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|||||| ||||| |||||||||||||||||| |
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| T |
10130716 |
cattcacttaaagttacaaattaagaatcac |
10130686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 10372199 - 10372329
Alignment:
| Q |
249 |
attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag |
348 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10372199 |
atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag |
10372298 |
T |
|
| Q |
349 |
cattcatttaaaattacaaattaagaatcac |
379 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |
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| T |
10372299 |
cattcacttaaagttacaaattaagaatcac |
10372329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 9994855 - 9994758
Alignment:
| Q |
14 |
aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9994855 |
aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttata |
9994758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 10035804 - 10035698
Alignment:
| Q |
145 |
atattcattcagatcattctttcagatcaaatatatata--cactttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaac |
242 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
10035804 |
atattcattcagatcattctttcagatgaaatatatatatacactttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaac |
10035706 |
T |
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| Q |
243 |
tatatgat |
250 |
Q |
| |
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|||||||| |
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| T |
10035705 |
tatatgat |
10035698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 10035952 - 10035899
Alignment:
| Q |
58 |
atctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
111 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
10035952 |
atctcagtagacaagttttggccttagcagtgaaacttaaaaagatgacttata |
10035899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 11778244 - 11778327
Alignment:
| Q |
180 |
tatacactttcttgaagagaaatgaaacgaa---aaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaa |
260 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| || |||||||||||||| | |||| ||||||||||||||||||||||| |
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|
| T |
11778244 |
tatacactttcttgaagcgaaatgaaatgaattaaactggatcttaaggtcagagccaggttcaactatatgattttgaagaaa |
11778327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 10264751 - 10264700
Alignment:
| Q |
331 |
atggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtc |
382 |
Q |
| |
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|||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
10264751 |
atggttttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc |
10264700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 120 - 381
Target Start/End: Original strand, 53693 - 53953
Alignment:
| Q |
120 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
53693 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc |
53791 |
T |
|
| Q |
220 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53792 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat |
53891 |
T |
|
| Q |
320 |
tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgt |
381 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53892 |
tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgt |
53953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 11488933 - 11488900
Alignment:
| Q |
272 |
attcaacaaatgtatataggaatatgaatattta |
305 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
11488933 |
attcaacaaatgtatataggaataagaatattta |
11488900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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