View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2506_low_7 (Length: 251)
Name: NF2506_low_7
Description: NF2506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2506_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 14168200 - 14168301
Alignment:
| Q |
151 |
aacgatatttagatcattttatgaatatacatgtttttcctatcgttattttctttaa-ttttttctcctaccaaaccactaaattatcatcttattttt |
249 |
Q |
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| T |
14168200 |
aacgatatttagatcatttaatgaatatacatgtttttcctatcgttattttctttaatttttttctcctaccaaaccactaaattatcatcttattttt |
14168299 |
T |
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| Q |
250 |
at |
251 |
Q |
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|| |
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| T |
14168300 |
at |
14168301 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 945342 - 945410
Alignment:
| Q |
179 |
acatgtttttcctatcgttattttctttaattttttctcctaccaaaccactaaattatcatcttatttt |
248 |
Q |
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|||||| ||||| ||| | ||||||||| |||||| ||| ||||||||||||| || ||||||||||||| |
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| T |
945342 |
acatgtatttccaatcataattttctttcattttt-ctcgtaccaaaccactagataatcatcttatttt |
945410 |
T |
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