View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_12 (Length: 244)
Name: NF2507_high_12
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40626795 - 40626565
Alignment:
| Q |
1 |
gcgacaactctggtggacaaaagctaacgactccatatttcttaaatcccaaagtgcttccaccgattacaacgcagacccaaaaaactccatcatacgc |
100 |
Q |
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| T |
40626795 |
gcgacaactctggtggacaaaagctaacgactccatatttcttaaatcccaaagtgcttccaccgattccaacgcagacccaaaaaactgcatcatacgc |
40626696 |
T |
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| Q |
101 |
tgggtgacagatcatcttaataccgatcatatctggtacgatcatattcatggtgagactgacagcactagtaggactaattcatcgtccctgagagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40626695 |
tgggtgacagatcatcttaataccgatcatatctggtacgatcatattcatggtgagactgaaagcactagtaggactaattcatcgtccctgagagcct |
40626596 |
T |
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| Q |
201 |
actacaaagatgttctctcacttttgtcctt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40626595 |
actacaaagatgttctctcacttttgtcctt |
40626565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 40638502 - 40638657
Alignment:
| Q |
1 |
gcgacaactctggtggacaaaagctaacgactccatatttcttaaatcccaaagtgcttccaccgattacaacgcagacccaaaaaactccatcatacgc |
100 |
Q |
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|
||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||| |||| ||| ||||||||||| |||||||||||||| |
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| T |
40638502 |
gcgacaactctggtggacaaaagctaatgaatccatatttcttaaatccaaaagtacttccacagattccaatgcagacccaaataactccatcatacgg |
40638601 |
T |
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| Q |
101 |
tgggtgacagatcatcttaataccgatcatatctggtacgatcatattcatggtga |
156 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40638602 |
tgggtgacagatcatcttaataccgatcatatttggtacgatcatattcatggtga |
40638657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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