View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_2 (Length: 590)
Name: NF2507_high_2
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 39918798 - 39918352
Alignment:
| Q |
20 |
ttatatgatccggccccatattttccgtctcttggaacggctaagaaggttccgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaa |
119 |
Q |
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| T |
39918798 |
ttatctgatccggccccatattttccgtctcttggaatggctaagaaggttccgagggtgagtttgtttttcaaaacagaatcaatgtcacgaggaaaaa |
39918699 |
T |
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| Q |
120 |
actcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgttt |
219 |
Q |
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| T |
39918698 |
actcagtggtggagaatttgtaacggtaaagtgtttcagcgtcgtttggtgtgagtttaaggattgttgttttggacgatgatgttttgagacggtgttt |
39918599 |
T |
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| Q |
220 |
gaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaacgttgtcgttttcagtagcc |
319 |
Q |
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| T |
39918598 |
gaaaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaactgatgcaacgttatcgttttcagtagcc |
39918499 |
T |
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| Q |
320 |
atgtaagaatactcagcaccattttcacgaaaccattgttccattttctctaccagttttagccctattcccattcttctatgatttggagaaactctta |
419 |
Q |
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| T |
39918498 |
atgtaagaatactcagcaccattttcacgaaaccattgttccattttctctaccagttttagccctattcccattcttctatgatttggagaaactctta |
39918399 |
T |
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| Q |
420 |
agcctaaaacgtaggctagttttgtgaaaacagggacatgattggaa |
466 |
Q |
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| T |
39918398 |
agcctaaaacgtaggctagttttgtgaaaacagggacatgattggaa |
39918352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 39918303 - 39918241
Alignment:
| Q |
515 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
577 |
Q |
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| T |
39918303 |
ccgcatgtaacggttttgatacaacctcgtatcattccgactgtctcattgcctatctctgct |
39918241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 5545448 - 5545517
Alignment:
| Q |
222 |
aaacggggttaacaaggattgacggtgtacggaactttgagtaaccgcatttgtcggtgaaaagtttaac |
291 |
Q |
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| T |
5545448 |
aaacggggttgacgagaattgacggtgtacggaactttgtataaccgcatttttcagtgaagagtttaac |
5545517 |
T |
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