View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_3 (Length: 496)
Name: NF2507_high_3
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 40626813 - 40627291
Alignment:
| Q |
1 |
acatgttttgacgttgccattgcgctttctctcagcaatttgaacgaggttctgatctatcaactctgtcaagtaccgttttgctacttgctctgggggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40626813 |
acatgttttgacgttgccattgcgctttctctcagcaatttgaacgaggttctgatctatcaactctgtcaagtaccgctttgctacttgctctgggggc |
40626912 |
T |
|
| Q |
101 |
tcttgatgttccccgtgatgtacacgttcctctgctaccaacaaagcaacgagtcttctaacaggaatcccaaattcaacagggaataacccaaagtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40626913 |
tcttgatgttccccgtgatgtacacgttcctctgctaccaacaaagcaacgagtcttctaacaggaatcccaaattcaacagggaataacccaaagtaaa |
40627012 |
T |
|
| Q |
201 |
ataggcatccccttagatacataggtaagtgattcttgattgctttaagcgtttcagaccaaatctgtatttgatcttccttgagcacagttgaccactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40627013 |
ataggcatccccttagatacataggtaagtgattcttgattgctttaagcgtctcagaccagatttgtatttgatcttccttgagcacagttgaccactc |
40627112 |
T |
|
| Q |
301 |
ctcatgtgtggtgtgttctttatgtgaaagtaaccgactcatttttaatatttgggatggcaggccaccacattttatcacaatttctcttccaatcttg |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40627113 |
ctaatgtgtggtgtgttctttatgtgaaagtaaccgactcatttttaatatttgggatggcaggccaccacattttatcacaatttctcttccaatcttg |
40627212 |
T |
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| Q |
401 |
attagctccggggtactgtccaccttcaaatatcttgtaaaaagaacccaactactttcatcatctaataactgtagtg |
479 |
Q |
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| T |
40627213 |
attagctccggggtactgtccaccttcaaatatcttgtaaaaagaacccaactactttcatcatctaataactgtagtg |
40627291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 40638483 - 40638211
Alignment:
| Q |
2 |
catgttttgacgttgccattgcgctttctctcagcaatttgaacgaggttctgatctatcaactctgtcaagtaccgttttgctacttgctctgggggtt |
101 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| | |
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| T |
40638483 |
catgttttgaccttgccattgcgctttctcttggcaatttgaacgaggttctgatctatcaactttgtcaagtacccttctgctacttgctctgggggct |
40638384 |
T |
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| Q |
102 |
cttgatgttccccgtgatgtacacgttcctctgctaccaacaaagcaacgagtcttctaacaggaatcccaaattcaacagggaataacccaaagtaaaa |
201 |
Q |
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|||| | ||| || ||||| || || |||||||| ||||||||||| || | |||||||| ||| |||||||||||| ||||||||| ||||||||||| |
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| T |
40638383 |
cttggtcttctccatgatgcacccgctcctctgcaaccaacaaagctaccaatcttctaatagggatcccaaattcagcagggaataggccaaagtaaaa |
40638284 |
T |
|
| Q |
202 |
taggcatccccttagatacataggtaagtgattcttgattgctttaagcgtttcagaccaaatctgtatttga |
274 |
Q |
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||| |||||||||||||| | ||||||||| || |||||| | |||| ||||||||||||| |||||||||| |
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| T |
40638283 |
tagacatccccttagatagagaggtaagtgtttgttgatttcattaaccgtttcagaccaagcctgtatttga |
40638211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40659303 - 40659208
Alignment:
| Q |
1 |
acatgttttgacgttgccattgcgctttctctcagcaatttgaacgaggttctgatctatcaactctgtcaagtaccgttttgctacttgctctgg |
96 |
Q |
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||||||||| || || |||||||||||||||| | || ||| || | |||| |||||||||||||||||||||||| || ||| ||| ||||||| |
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| T |
40659303 |
acatgttttcacctttccattgcgctttctcttggaaacttggaccatgttccgatctatcaactctgtcaagtacctttctgcaactagctctgg |
40659208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 40638066 - 40638012
Alignment:
| Q |
422 |
accttcaaatatcttgtaaaaagaacccaactactttcatcatctaataactgta |
476 |
Q |
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| T |
40638066 |
accttcaaatgtcttgtaaacagcacccaactactgtcgtcatctaataactgta |
40638012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 40659146 - 40659015
Alignment:
| Q |
155 |
cttctaacaggaatcccaaattcaacagggaataacccaaagtaaaataggcatccccttagatacataggtaagtgattcttgattgctttaagcgttt |
254 |
Q |
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||||| ||||| |||||||||||| ||||||||| | ||||||||||||| |||| || ||||| |||||||| ||| || |||| | ||| || |
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| T |
40659146 |
cttctgacagggatcccaaattcagcagggaatatcacaaagtaaaatagacatcttctcagataagaaggtaagttattattaattgtgtcgagcattc |
40659047 |
T |
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| Q |
255 |
cagaccaaatctgtatttgatcttccttgagc |
286 |
Q |
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|||||||| | |||||||||| ||| |||||| |
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| T |
40659046 |
cagaccaactttgtatttgatattcattgagc |
40659015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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