View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_5 (Length: 402)
Name: NF2507_high_5
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 48344972 - 48345342
Alignment:
| Q |
13 |
gagaagaatcattgcaaacgatgaagataccttaatcaaatcaaaatcaagagctttgaagatttacaacaatctcaaaaaagtgaagcaacccatttca |
112 |
Q |
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| T |
48344972 |
gagaagaatcattgcaaacgatgaagataccttaatcaaatcaaaatcaagagcgttgaagatttacaacaatctcaaaaaagtgaagcaacccatttca |
48345071 |
T |
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| Q |
113 |
ccaggtggaaaactcacaagttttctcaactctctcttcataaacacaaagaaaacaaaaactgtttcgtcttatgaagactcaaatgcagagaggaaag |
212 |
Q |
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| T |
48345072 |
ccaggtggaaaactcacaagttttctcaactctctcttcataaacacaaagaaaacaaaaactgtttcgtcttatgaagactcaaatgcagagaggaaag |
48345171 |
T |
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| Q |
213 |
gtaaaccaggacaagcttcaacaacttgttcttcagcttcttcgtattcacgttcttgtttgagtaaaaattcatctaaatcaagagataaattacataa |
312 |
Q |
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| T |
48345172 |
gtaaaccaggacaagcttcaacaacttgttcttcggcttcttcgtattcacgttcttgtttgagtaaaaattcatctaaatcaagagataaattacacaa |
48345271 |
T |
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| Q |
313 |
tggtgataaaagaacggtccgtttttacccggtgagtgtgattgttgatgaagataatcgagcttgtggtc |
383 |
Q |
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| T |
48345272 |
tggtgataaaagaacggtccgtttttacccggtgagtgtgattgttgatgaagataatcgagcttgtggtc |
48345342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 3758715 - 3758806
Alignment:
| Q |
56 |
aaatcaagagctttgaagatttacaacaatctcaaaaaagtgaagcaacccatttcaccaggtggaaaactcacaagttttctcaactctct |
147 |
Q |
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| T |
3758715 |
aaatcaagagccgttaagatttacaataacttgaagaaagtgaagcaaccgatttcgccaggtggaaaactcacgagtttcctcaactctct |
3758806 |
T |
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