View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_6 (Length: 349)
Name: NF2507_high_6
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 45394225 - 45394553
Alignment:
| Q |
17 |
actttaagattataatgaaaagaatgagggaatgtctgaagttgttgagagaggttttgattcatttacaatttaaaaatccttcatgcttcattattct |
116 |
Q |
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| T |
45394225 |
actttaagattataatgaagagaatgagggaatgtctgaagttgttgagagaggttttgatttatttacgatttaaaaatccttcatgctttattattct |
45394324 |
T |
|
| Q |
117 |
cattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45394325 |
cattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaatgtggattgtgaatcaattttgttga |
45394424 |
T |
|
| Q |
217 |
gaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatagaatagtcgcattgtttcaagtccatattt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||| |
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| T |
45394425 |
gaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatggaacagtcgcattatttcaaatccatattt |
45394524 |
T |
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| Q |
317 |
ccattgcagaccttcaattaatgcttaaa |
345 |
Q |
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| T |
45394525 |
ccattgcacacctttagttaatgcttaaa |
45394553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 53 - 277
Target Start/End: Original strand, 40367161 - 40367385
Alignment:
| Q |
53 |
tgaagttgttgagagaggttttgattcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaa |
152 |
Q |
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| T |
40367161 |
tgaagttgttgagagaggttttgattcatttacgatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaa |
40367260 |
T |
|
| Q |
153 |
ttatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40367261 |
ttatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacat |
40367360 |
T |
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| Q |
253 |
ttgcttaaccaaacatggtgagaag |
277 |
Q |
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| T |
40367361 |
ttgcttaaccaaacatggtgagaag |
40367385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 40371893 - 40371968
Alignment:
| Q |
273 |
agaagaaacatatagaatagtcgcattgtttcaagtccatatttccattgcagaccttcaattaatgcttaaagcat |
349 |
Q |
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| T |
40371893 |
agaagaaacatatggaacaatcgcattatttcaagtccata-ttccattacacaccttcagttaatgcttaaagcat |
40371968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 71 - 285
Target Start/End: Complemental strand, 40584295 - 40584077
Alignment:
| Q |
71 |
ttttgattcatttacaatttaaa--aatccttcatgcttcattattctcattgaaattatgaagat-aaaagtttattttttaaattatcaaatcatt-a |
166 |
Q |
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||||||||||||| | ||||||| |||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| | |
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| T |
40584295 |
ttttgattcattttcgatttaaagtaatctttcatgcttcattattcttattgaaattatgaagatgaaaaatttatttttaaaattatcaaatcattta |
40584196 |
T |
|
| Q |
167 |
tgcattgaatttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaac |
266 |
Q |
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|||| |||||||||||||||||| ||||| | ||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
40584195 |
tgcaatgaatttgaatgaaatcatggtgggtcatgaatcaattttgttgagacgagtggttacttacaacaaattgtaactcaaatttgcttaaccaaac |
40584096 |
T |
|
| Q |
267 |
atggtgagaagaaacatat |
285 |
Q |
| |
|
|||||||| ||||| |||| |
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| T |
40584095 |
atggtgaggagaaagatat |
40584077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 281
Target Start/End: Complemental strand, 20606808 - 20606615
Alignment:
| Q |
88 |
tttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaa |
186 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||||| ||||| | ||||||||||||||||||| || |
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| T |
20606808 |
tttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataa |
20606709 |
T |
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| Q |
187 |
tcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac |
281 |
Q |
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| T |
20606708 |
tcaagg-gggtcatgaatcaattttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac |
20606615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 40584019 - 40583974
Alignment:
| Q |
304 |
caagtccatatttccattgcagaccttcaattaatgcttaaagcat |
349 |
Q |
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| T |
40584019 |
caagtccatatttccattgcacaccttcaattatcgcttaaagcat |
40583974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 281
Target Start/End: Original strand, 43659889 - 43660094
Alignment:
| Q |
77 |
ttcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca--ttatgcattga |
174 |
Q |
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||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||||||||||| | ||||||||||| |
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| T |
43659889 |
ttcattttcgatttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattatcaaattattttatgcattga |
43659988 |
T |
|
| Q |
175 |
atttgaatgaaatcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgag |
274 |
Q |
| |
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|||||||| |||||||| | | |||||||||||||| |||||||| ||| | |||||||||| ||| | ||||||||||||||| |||||||| |
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| T |
43659989 |
atttgaatataatcaagg-gagtcatgaatcaattttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgag |
43660087 |
T |
|
| Q |
275 |
aagaaac |
281 |
Q |
| |
|
|||||| |
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| T |
43660088 |
gagaaac |
43660094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 281
Target Start/End: Complemental strand, 30581153 - 30580960
Alignment:
| Q |
88 |
tttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaa |
186 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||||| ||||| | ||||||||||||||||||| || |
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| T |
30581153 |
tttaaaaatcattcatgtttcattattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataa |
30581054 |
T |
|
| Q |
187 |
tcaaggtggattgtgaatcaattttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac |
281 |
Q |
| |
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|||||| || | |||||||||||||| |||||||| ||| | |||||||||| ||| | ||||||||||||||| |||||||| |||||| |
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| T |
30581053 |
tcaagg-gggtcatgaatcaattttgtagagaggggaacatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac |
30580960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 38883678 - 38883768
Alignment:
| Q |
70 |
gttttgattcatttacaatttaaaaatccttcatgcttcattattctcattgaaattatgaagataaaagtttattttttaaattatcaaatc |
162 |
Q |
| |
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||||| |||| ||| |||||||||| | |||||| |||||||||||| |||||||||| || ||||||| |||||||||||| ||||||||| |
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| T |
38883678 |
gttttcattccttttcaatttaaaatccgttcatgtttcattattctcgttgaaattataaaaataaaag-ttattttttaaa-tatcaaatc |
38883768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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