View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_high_9 (Length: 305)
Name: NF2507_high_9
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 29016376 - 29016102
Alignment:
| Q |
17 |
acttatccagaggcaaattcacatccttagcaacctcttgaagatacttatcaacaagcttagccacctttaactttgagctatgtgaaactgatgaaga |
116 |
Q |
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| T |
29016376 |
acttatccagaggcaaattcacatccttagcaacctcttgaagatacttatcaacaagcttagccaccttcaactttgagctatgtgaaactgaagaaga |
29016277 |
T |
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| Q |
117 |
tcttctactctcttgcaattcaaaatcaacattctcagccgaacgtgacctcctccgttcaaaagcgaaccttgatctttgaggactagttgccggactt |
216 |
Q |
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| T |
29016276 |
tcttctactctcttgcaattcaaaatcaacattctcagccgaacgtgaccttctccgttcaaaagcgaaccttgatctttgaggactagttggtggactt |
29016177 |
T |
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| Q |
217 |
tgacttaattgcatcataaactcttccaatatgttcatcaccaaatccacatcagaaaccagtataagatcattc |
291 |
Q |
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| T |
29016176 |
tgacttatttgcaacataaactcttccaatatgttcatcaccaaatcaacatcacaaaccattataagatcattc |
29016102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 14129977 - 14129847
Alignment:
| Q |
31 |
aaattcacatccttagcaacctcttgaagatacttatcaacaagcttagccacctttaactttgagctatgtgaaactgatgaagatcttctactctctt |
130 |
Q |
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||||||||||| | ||||| || ||||| ||| |||| ||||| || ||||| || || ||||| |||||||| |||| || || || |||||||||| |
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| T |
14129977 |
aaattcacatctcttgcaacttcctgaaggtacctatccacaagttttgccactttcaattttgaactatgtgatgctgaagaggacctcctactctctt |
14129878 |
T |
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| Q |
131 |
gcaattcaaaatcaacattctcagccgaacg |
161 |
Q |
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| T |
14129877 |
gtaattcaaagttaatattctcagccgaacg |
14129847 |
T |
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