View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_1 (Length: 626)
Name: NF2507_low_1
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 78 - 621
Target Start/End: Complemental strand, 6610142 - 6609602
Alignment:
| Q |
78 |
acaaaggacaattatagtggctctgccactc--aataaaaactattgtaacaactaacaagtgnnnnnnnnnnnnnnnnnnnctataaattatttcagct |
175 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6610142 |
acaaaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttcttt-----ctataaattatttcagct |
6610048 |
T |
|
| Q |
176 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttcaactcatggagtgtgtc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6610047 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttcaactcatggagtgtgtc |
6609948 |
T |
|
| Q |
276 |
tctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattacaatttctacattagaacttgtccaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
6609947 |
tctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccaaatgtgtgctctcaactctattacaacttctacattagaacttgtccaa |
6609848 |
T |
|
| Q |
376 |
acctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgcgccttcatttccatgattgttttgt |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6609847 |
acctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgcgccttcatttccatgattgttttgt |
6609748 |
T |
|
| Q |
476 |
caatgtaattaagtctcttcatttccatgattgtttacactgtcaattaatataccgttagatcgttaaaattattctttaataatattatgtgttgatt |
575 |
Q |
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| T |
6609747 |
caatgtaattaagtctcttcatttccattattttttacactgtcaattaatataccgttggatcgttaaaattattctttaataatattatgtgttgatt |
6609648 |
T |
|
| Q |
576 |
tgttatttcatttttgtgttacatagggatgtgatggatctctgct |
621 |
Q |
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| T |
6609647 |
tgttatttcatttttgtgttacatagggatgtgaaggatctgtgct |
6609602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 243 - 488
Target Start/End: Complemental strand, 6602465 - 6602220
Alignment:
| Q |
243 |
ttgtcatcatagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaac |
342 |
Q |
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| T |
6602465 |
ttgtcaacatagtttcagctcatggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaac |
6602366 |
T |
|
| Q |
343 |
tatattacaatttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttc |
442 |
Q |
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| T |
6602365 |
tatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttc |
6602266 |
T |
|
| Q |
443 |
tctcttgcgccttcatttccatgattgttttgtcaatgtaattaag |
488 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6602265 |
tctcttgcgccttcatttccatgattgttttgttaatgtaattaag |
6602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 6610244 - 6610181
Alignment:
| Q |
16 |
cactatactgtttttaatattctcatatactgcatcatcttgccacttagagcaattgtttaac |
79 |
Q |
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| T |
6610244 |
cactatactgtttttaatattctcatatactgcatcatcttgccacttagagcaattgtttaac |
6610181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 578 - 621
Target Start/End: Complemental strand, 6602143 - 6602100
Alignment:
| Q |
578 |
ttatttcatttttgtgttacatagggatgtgatggatctctgct |
621 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6602143 |
ttatttcatttttgtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 6602588 - 6602531
Alignment:
| Q |
81 |
aaggacaattatagtggctctgccactcaataaaaactattgtaacaactaacaagtg |
138 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
6602588 |
aaggacaatcatagtggctctgccactctataaaaactatgttaacaattaacaagtg |
6602531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 6602517 - 6602462
Alignment:
| Q |
158 |
ctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgt |
213 |
Q |
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| T |
6602517 |
ctataaattgtttcagcttacaacttattgtcacacaaagttctaattaagtttgt |
6602462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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