View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_10 (Length: 343)
Name: NF2507_low_10
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 38863038 - 38862874
Alignment:
| Q |
1 |
atatataatttcatactttgtaaagtttttctttcctttacagaacaacagtgcaaaatnnnnnnnttcaagaatgaggtaatgatgatgacgatgaagg |
100 |
Q |
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| T |
38863038 |
atatataatttcatactttgtaaagtttttctttcctttacagaacaacagtgcaaaataaaaaaattcaagaatgaggtaatgatgatgacgatgaagg |
38862939 |
T |
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| Q |
101 |
aagatgaggaatattcttatagaacatttatcctgtaatcatgaattaagaattcaaagttgatg |
165 |
Q |
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| T |
38862938 |
aagatgaggaatattcttatagaacatttatcctgtaatcatgaattaagaattcaaaattgatg |
38862874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 38862827 - 38862706
Alignment:
| Q |
212 |
gctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttg |
311 |
Q |
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| T |
38862827 |
gctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacaaattttgagaattaatattggtctcaatctgaatttg |
38862728 |
T |
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| Q |
312 |
atcactatgatattcacctttg |
333 |
Q |
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| T |
38862727 |
atcactatgatattcacttttg |
38862706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 19719627 - 19719713
Alignment:
| Q |
213 |
ctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctc |
299 |
Q |
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| T |
19719627 |
ctaagaagttaagctcaatagttgctcaagatattcagcacccaaatcttcaaacacaaacacatttttagatttagtattggtctc |
19719713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 19892512 - 19892598
Alignment:
| Q |
213 |
ctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctc |
299 |
Q |
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| T |
19892512 |
ctaagaagttaagctcaatagttgctcaagatattcagcacccaaatcttcaaagacaaacacatgtttagatttagtattggtctc |
19892598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 19840935 - 19840851
Alignment:
| Q |
238 |
tccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttgatcactatgat |
322 |
Q |
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| T |
19840935 |
tccagatattctgaacccaaatcctcaaacacaaacacattttgagatttagtattggtttctctctgaattcgatcactatgat |
19840851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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