View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_16 (Length: 233)
Name: NF2507_low_16
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_16 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 373445 - 373246
Alignment:
| Q |
16 |
atgaacccgtcatcaccatcactgaaaaagttgctgctttcaaagtccaagatcttttgaacttcagcatgacgtccaaatgtcatcgccaattttccaa |
115 |
Q |
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| T |
373445 |
atgaactcctcatcaccattactgaaaaagttgctgctttcaaagtccaagatcttttgaacttcagcatgacgtccaaatgtcatcgccaattttccaa |
373346 |
T |
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| Q |
116 |
taagaaggtggcatttagagcgctaagtcgagactttctatggtacattgttgatcccctaccgtgtgcagcaaaaagccggtttatgtagaggttgtcc |
215 |
Q |
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| T |
373345 |
taagaaggtggtgtttagagcgctaagtcgagactttctatggtacattgttgatcccctaccgtgcgcatcaaaaagccggtttatgtagaggttgtcc |
373246 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 19919422 - 19919238
Alignment:
| Q |
27 |
atcaccatcactgaaaaagttgctgctttcaaagtccaagatcttttgaacttcagcatgacgtccaaatgtcatcgccaattttccaataagaaggtgg |
126 |
Q |
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||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| | ||||| |||||||||| ||| |
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| T |
19919422 |
atcaccatcactgaaaaggttgctgctttcggagtccaggatctttagaacttcagcatgacgtccaaataccattggaaatttgccaataagaaagtga |
19919323 |
T |
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| Q |
127 |
catttagagcgctaagtcgagactttctatggtacattgttgatcccctaccgtgtgcagcaaaaagccggtttatgtagaggtt |
211 |
Q |
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| T |
19919322 |
cgttcagagcgctaaatagaaaatgtctatggtacatcgttgatcccttaccgtgtgcagcgaaacgccggtttatgcagaggtt |
19919238 |
T |
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