View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_18 (Length: 227)
Name: NF2507_low_18
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29015702 - 29015928
Alignment:
| Q |
1 |
tatcttgtagtggaacagaaagtttgagagataaatcagtaagaaaaagatggtggggtgaagatttagctgaattgaaaattgatctttattggagaat |
100 |
Q |
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| T |
29015702 |
tatcttgtagtggaacagaaagtttgagagataaatcagtaagaaaaggatggtggggtgaagatttagctgaattgaaaattgatctttattggagaat |
29015801 |
T |
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| Q |
101 |
catgattgctttaaaatctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaaaactggttctgat |
200 |
Q |
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| T |
29015802 |
catgattgctttaaaatctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaaaaccggttccgat |
29015901 |
T |
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| Q |
201 |
tctgattcaagaagtgaaatagcatca |
227 |
Q |
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| T |
29015902 |
tctgattcaagaagtgaaatagcatca |
29015928 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 14129262 - 14129434
Alignment:
| Q |
15 |
acagaaagtttgagagataaatcagtaagaaaaagatggtggggtgaagatttagctgaattgaaaattgatctttattggagaatcatgattgctttaa |
114 |
Q |
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||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||| || | | || || ||||||||||||| ||||| || | | |
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| T |
14129262 |
acagaaagtttgagaatcaaatcaggaagtaaaggatggtgggctgaagatttagcagagcttagcatagacctttattggagaacaatgatagcaatca |
14129361 |
T |
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| Q |
115 |
aatctgatggaaaaatgcctttaaatctcatcggtgatgcgttgaaaatttatgcttctagatggctaccaaa |
187 |
Q |
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| T |
14129362 |
aatctggtggcaaggttccttcaaatctcattggcgatgcattgaaaatttatgcatctagatggttaccaaa |
14129434 |
T |
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