View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_19 (Length: 223)
Name: NF2507_low_19
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 7980277 - 7980465
Alignment:
| Q |
17 |
ataaaaagaacggggttatgtcttggcaaattttatgctacattcaaatattattgtaataattaaatctccaacaaatttgcacatggtggaaacaatc |
116 |
Q |
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| T |
7980277 |
ataagaagaacggggttatgtcttggcaaattttatgctacattcaaatattattgtaataattaaatctccaacaaatttgcacatgatggaaacaatc |
7980376 |
T |
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| Q |
117 |
atctaataatcatatttgtgtttttcgatagacagatatatgatacatgtcaaatataacttattgatcattataacggtcgataggac |
205 |
Q |
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| T |
7980377 |
atctaataatcatatttgtgtttttcgataaacagatacatgatacatgtcaaatataacctattgatcattataacggtcgataggac |
7980465 |
T |
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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 25187017 - 25187127
Alignment:
| Q |
91 |
caaatttgcacatggtggaaacaatcatctaataatcatatttgtgtttttcgatagacagatatatgatacatgtcaaatataacttattgatcattat |
190 |
Q |
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||||||| |||||| || |||||||||||||||||||| |||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||| |
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| T |
25187017 |
caaatttacacatgatgaaaacaatcatctaataatcacatttgtgtttttcgataggaatatacttgacacatgtcaaatataacttattgatcattat |
25187116 |
T |
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| Q |
191 |
aacggtcgata |
201 |
Q |
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| T |
25187117 |
aacagtcgata |
25187127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 3694463 - 3694550
Alignment:
| Q |
94 |
atttgcacatggtggaaacaatcatctaataatcatatttgtgtttttcgatagacagatatatgatacatgtcaaatataacttatt |
181 |
Q |
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||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||| |||| | ||||||||||||||||||| |
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| T |
3694463 |
atttgcacatgatggaaacaatcatctagtaatcacctttgtgtttttcgatagacacatacatgacatatgtcaaatataacttatt |
3694550 |
T |
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