View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_20 (Length: 213)
Name: NF2507_low_20
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_20 |
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| [»] chr1 (7 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9255562 - 9255350
Alignment:
| Q |
1 |
tagacatatgttcttccatatataatagaaaaataccgtggaaacnnnnnnngtcaagaagaattcattagtagaggctctgttgtatcttcatcaataa |
100 |
Q |
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| T |
9255562 |
tagacatatgttcttccatatatgatagaaatataccgtggaaacaaaagaagtcaagaagaattcattagtagaggctctgttgtatcttcatcaataa |
9255463 |
T |
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| Q |
101 |
aactaggagagccaacatcagtttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9255462 |
aactaggagagccagcatcagtttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacatt |
9255363 |
T |
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| Q |
201 |
ctcaatatctcct |
213 |
Q |
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||||||||||||| |
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| T |
9255362 |
ctcaatatctcct |
9255350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 9318703 - 9318612
Alignment:
| Q |
122 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9318703 |
tttcattagagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcct |
9318612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 9319599 - 9319690
Alignment:
| Q |
122 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9319599 |
tttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcct |
9319690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 9349916 - 9350007
Alignment:
| Q |
122 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9349916 |
tttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttcct |
9350007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 9486569 - 9486514
Alignment:
| Q |
158 |
tttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9486569 |
tttcatgtggatatagtaaaggctttggaggtatttcaatattttcaatatctcct |
9486514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 9433210 - 9433162
Alignment:
| Q |
165 |
tggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9433210 |
tggatatagcaaaggctttggaggcatttcaatattttcaatatctcct |
9433162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 9348926 - 9348871
Alignment:
| Q |
158 |
tttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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| T |
9348926 |
tttcatctggataaagagaaggctttggaggcatttcaatatcctcaatatctcct |
9348871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 15927613 - 15927518
Alignment:
| Q |
118 |
tcagtttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctcct |
213 |
Q |
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|||||||||| ||||||||| |||| ||| | | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
15927613 |
tcagtttcattagagttgacgtcaaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacattctcaatatctcct |
15927518 |
T |
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