View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_23 (Length: 210)
Name: NF2507_low_23
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_23 |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 43505383 - 43505557
Alignment:
| Q |
13 |
atgaatagaaagaaaaagaaatagagataaattaacattcagcggtagaatgttagagtgaataacgatggaaaacaaaaatttcaacataaccacaact |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43505383 |
atgaatagaaagaaaaagaaataaagataaattaacattcagtggtagaatgttagagtgaataatgatggaaaacaaaaatttcaacataaccacaact |
43505482 |
T |
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| Q |
113 |
actattgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaag |
187 |
Q |
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| T |
43505483 |
actattgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaag |
43505557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 39071093 - 39071266
Alignment:
| Q |
13 |
atgaatagaaagaaaaagaaatagagataaattaacattcagcggtagaatgttagagtgaataacgatggaaaacaaaaatttcaacataaccacaact |
112 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39071093 |
atgaatagaa-gaaaaagaaatagagataaattaacattcggtggtagaatgttagagtgaataatgatggaaaacaaaaatttcaacataaccacaact |
39071191 |
T |
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| Q |
113 |
actattgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaag |
187 |
Q |
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| T |
39071192 |
actattgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcaaatactatatgaag |
39071266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 348428 - 348257
Alignment:
| Q |
13 |
atgaatagaaagaaaaagaaatagagataaattaacattcagcggtagaatgttag--agtgaataacgatggaaaacaaaaatttcaacataaccacaa |
110 |
Q |
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|||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | | |||| |||||||||||| |||||||| ||||||||| |
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| T |
348428 |
atgaatagaaagaaaaagaaatggaaataaattaatattcagtggtagaatattagtaaatatataatgatggaaaacaagaatttcaatgtaaccacaa |
348329 |
T |
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| Q |
111 |
ctactattgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaa |
186 |
Q |
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|||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
348328 |
ctacctttgtaaataagagttgttctttc----aacaaaattctcctatctccaaaacctacacatactatatgaa |
348257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 42124984 - 42124820
Alignment:
| Q |
20 |
gaaagaaaaagaaatag-agataaattaacattcagcggtagaatgtta-gagtgaataacgatggaaa-acaaaaatttcaacataaccacaactacta |
116 |
Q |
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||||||||||||||| | |||||||||||||||| | |||||||||||| |||| |||||||||| ||| ||| ||||||||| |||||||||| || |
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| T |
42124984 |
gaaagaaaaagaaatgggagataaattaacattccgtggtagaatgttaagagtaaataacgatgaaaacacacaaatttcaatgtaaccacaaccacct |
42124885 |
T |
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| Q |
117 |
ttgcaaataagagttgttctttcttccaacaaaattctcctatctccaaagcctgcacatactatatga |
185 |
Q |
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||| ||||||||||||||||||| |||||||||||||| |||||||| || | | ||||||||||| |
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| T |
42124884 |
ttgtaaataagagttgttctttc----aacaaaattctcctgtctccaaaacccgtatatactatatga |
42124820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 30728 - 30777
Alignment:
| Q |
137 |
ttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaa |
186 |
Q |
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| T |
30728 |
ttctttcaacaaaattatcctatctccaaaacattcacatactatatgaa |
30777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 5805 - 5756
Alignment:
| Q |
137 |
ttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaa |
186 |
Q |
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||||| |||||||||| ||||||||||||| | | ||||||||||||||| |
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| T |
5805 |
ttctttcaacaaaattatcctatctccaaaacattcacatactatatgaa |
5756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 14833894 - 14833943
Alignment:
| Q |
137 |
ttcttccaacaaaattctcctatctccaaagcctgcacatactatatgaa |
186 |
Q |
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||||| |||||||||| ||||||||||||| | | ||||||||||||||| |
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| T |
14833894 |
ttctttcaacaaaattatcctatctccaaaacattcacatactatatgaa |
14833943 |
T |
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