View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_3 (Length: 533)
Name: NF2507_low_3
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 71 - 282
Target Start/End: Complemental strand, 29831376 - 29831158
Alignment:
| Q |
71 |
aagtatatcatgttaatcacgtattccaaacttttagacgtataaagca---agcaagtaaatgacacacccaaacttcctaataagnnnnnnntcaaag |
167 |
Q |
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| T |
29831376 |
aagtatatcatgttaatcacgtattccaaacatttagacgtataaagcagcaagtaagtaaatgacacacccaaacttcctaataagaaaaaa-tcaaag |
29831278 |
T |
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| Q |
168 |
atctatccactaaaaaacacaaacgcgtattatttttcacacaatcaatagag-----cttactctatacaaaatgcttagttttcattaaccaacaaac |
262 |
Q |
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| T |
29831277 |
atctatccactaaaaaacacaaacgcgtattatttttcacacaatcaatagagcttagcttactctatacaaaatgtttagttttcattaaccaacaaac |
29831178 |
T |
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| Q |
263 |
acgctattaacattctaaat |
282 |
Q |
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| T |
29831177 |
acgctattaaaattctaaat |
29831158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 354 - 526
Target Start/End: Complemental strand, 29831149 - 29830980
Alignment:
| Q |
354 |
attcaataacgagagaaaggaatagcgcgtggagacctgagaggaacttcaccggtttgtcttccgttaatatcataatgaataacgccggagaaatcca |
453 |
Q |
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| T |
29831149 |
attcaataacgagagaaaggaatagcgcgtggagacctgagaggaacttcaccggtttgtcttccgttaatatcataatgaataacgcctgagaaatcca |
29831050 |
T |
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| Q |
454 |
acggctcacactttcctcccatcaatatctccttctgccaaacaccgccgttaattaattcattatccctttg |
526 |
Q |
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| T |
29831049 |
acggctcacattttcctcccatcaatatctccttctgccaaacaccgtcgt---ttaattcattatctctttg |
29830980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 369 - 505
Target Start/End: Original strand, 46221232 - 46221368
Alignment:
| Q |
369 |
aaaggaatagcgcgtggagacctgagaggaacttcaccggtttgtcttccgttaatatcataatgaataacgccggagaaatccaacggctcacactttc |
468 |
Q |
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|||||| |||||||||||||||||| |||||||||| || ||| | ||||||||||| || | ||| || |||||||||||||||||||||||||||| |
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| T |
46221232 |
aaaggactagcgcgtggagacctgatcggaacttcacgcgtctgtttcccgttaatatcgtagtaaatcacaccggagaaatccaacggctcacactttc |
46221331 |
T |
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| Q |
469 |
ctcccatcaatatctccttctgccaaacaccgccgtt |
505 |
Q |
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| T |
46221332 |
ctcccatcaaaatctccttctgccaaacgccgccgtt |
46221368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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