View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_5 (Length: 420)
Name: NF2507_low_5
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 43017072 - 43017466
Alignment:
| Q |
1 |
cacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatggactaattaatact |
100 |
Q |
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| T |
43017072 |
cacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatggactaat----act |
43017167 |
T |
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| Q |
101 |
tccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaaccctacaaacttt |
200 |
Q |
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| T |
43017168 |
tccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaaccctacaaacttt |
43017267 |
T |
|
| Q |
201 |
accctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagtaaacattcaaaat |
300 |
Q |
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| T |
43017268 |
accctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagtaaacattcaaaat |
43017367 |
T |
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| Q |
301 |
aataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaa |
399 |
Q |
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| T |
43017368 |
aataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaattggaagaggaa |
43017466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 35057106 - 35057214
Alignment:
| Q |
288 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
387 |
Q |
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| T |
35057106 |
aaacattcaaaataataaatcatcacataaacctgagattacagaacaaatcaaatttatcttagagatcactggagatgtaaccaagaat---agaaaa |
35057202 |
T |
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| Q |
388 |
ttggaagaggaa |
399 |
Q |
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|||||||||||| |
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| T |
35057203 |
ttggaagaggaa |
35057214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 35056999 - 35057058
Alignment:
| Q |
225 |
ttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaattta |
284 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
35056999 |
ttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaataattta |
35057058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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