View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_7 (Length: 377)
Name: NF2507_low_7
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 126 - 377
Target Start/End: Complemental strand, 11382522 - 11382270
Alignment:
| Q |
126 |
atagcatttcattaattaaaatataatcattataaatccgtacaacgataacaatcaagcattatcttgctaagtatcgtcggcattaatcataacactc |
225 |
Q |
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| T |
11382522 |
atagcatttcaataattaaaatttaatcattataatttcgtacaacgataacaatcaaacattatcttgctaagtatcatcggcattaattataacacta |
11382423 |
T |
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| Q |
226 |
acggtatttgtcgccgctttagcaagatcatggacaatcttatttgcttat-tttacacaaactccacactagagtttccaaattatatggttagaaggt |
324 |
Q |
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| T |
11382422 |
acggtatatatggccactttagcaagatcatgaacaatcttatttgtttatctttgcacaaactccacgctagagtttccaaattatatgattagaaggt |
11382323 |
T |
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| Q |
325 |
tccatgttttttaaataatctttttccattaaccaagtgattgggatggatct |
377 |
Q |
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| T |
11382322 |
tccatattttttaaataatctttttccgttaaccaagtgattgggatggatct |
11382270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 11382674 - 11382581
Alignment:
| Q |
14 |
gaagtatacaacgaagacagagcacaatcactacttctgcttcaaaaggattctcatttaactcggtttgtatacttcagcttatacaaactat |
107 |
Q |
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| T |
11382674 |
gaagtatacaacgaagacagagcacaatcactacttctgcttcaaaaggattctcatttaattcggtttgcatactttagcttatacaaactat |
11382581 |
T |
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