View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2507_low_9 (Length: 347)
Name: NF2507_low_9
Description: NF2507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2507_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 15288830 - 15288498
Alignment:
| Q |
18 |
gacaacaccataaaacagtgattagaggcatgaaagaaagcttagaaagggtttgaaaatgggaagcacaaaccccttcaatgataatctttcctccttc |
117 |
Q |
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| T |
15288830 |
gacaacaccataaaacagtgattagaggcatgaaagaaagcttagaaagggtttgaaaatgggaagcacaaaccccttcaatgataatctttcctccttc |
15288731 |
T |
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| Q |
118 |
aataagaaattttttcatttgactctttattcgttgcttcccatatcccttctttgtttatacttgatccttttgtcccttactccttttgcaccaacta |
217 |
Q |
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| T |
15288730 |
aataagaaattttttcatttaactctttattcattgcttcccatatcccttctttgtatatacttgatccttttgtcccttactccttttgcaccaacta |
15288631 |
T |
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| Q |
218 |
agcttcttcattctaccaccatttccacctaccactattcatctacttactcttctcctccttcaacttcttttgtaggtaaatatgcatgcataatta- |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15288630 |
agcttcttcattctaccaccatttccacctaccactattcatctacttactcttctcctccttcaacttcttttgtaggtaaatatgcatgcataattaa |
15288531 |
T |
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| Q |
317 |
--agttcttttaaatatcatgctagttgagatt |
347 |
Q |
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| T |
15288530 |
ttagttcttttaaatatcatgctagttgagatt |
15288498 |
T |
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