View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2508_high_1 (Length: 547)
Name: NF2508_high_1
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2508_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 53984795 - 53984254
Alignment:
| Q |
1 |
gccaaaaggaggcttgaatgtgaaaggaaggaagaagagggccaaagtatgtttggcaaagaatgccaatgttggaaaaacttccttgcaaaagaaactt |
100 |
Q |
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| T |
53984795 |
gccaaaaggaggcttgaatgtgaaaggaaggaagaagagggccaaagtatgtttggcaaagaatgccaatgttggaaaaacttccttgcaaaagaaactt |
53984696 |
T |
|
| Q |
101 |
cgagaacttcaagggactgtaccagggagcttgcagggattggacgcaaacaatttgttccatagtattgaaaaatacatacatctacttgaagctaaag |
200 |
Q |
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| T |
53984695 |
cgagaacttcaagggactgtaccagggagcttgcagggattggacacaaacaatttgttccatagtattgaaaaatacatacatctacttgaagctaaag |
53984596 |
T |
|
| Q |
201 |
tcacaatcttaaggtgcttgtccaacttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaattt |
300 |
Q |
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| T |
53984595 |
tcacaatcttaaggtgcttgtccaacttgtatggggtatagtaggatttaattattggcactagactaaaaaggggtcgaatgaatcttaaaagtaattt |
53984496 |
T |
|
| Q |
301 |
ctctaaccaccaaaaaataatccatgttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtg |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984495 |
ctctaagcaccaaaaaataatccatgttttatatttaggctagagaaagaaatcgacccacaaaaggggtgaacttgcagggtttctttccttccgggtg |
53984396 |
T |
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| Q |
401 |
tggagggaataatattatgtttgtaa-nnnnnnnnnnnnnnnnnnncaacatgcatgatttttactcacgtctcctattattctcatcatatatcttact |
499 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984395 |
tggagggaataatattatgtttgtaatttttttttttttactttttcaacatgcatgatttttactcacgtctcctattattctcatcatatatcttact |
53984296 |
T |
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| Q |
500 |
taatttcctccctttttggtttctttttagccattcatctca |
541 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53984295 |
taatttcctccctttttggtttctttttagccattcttctca |
53984254 |
T |
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