View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2508_high_3 (Length: 354)
Name: NF2508_high_3
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2508_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 40879695 - 40880014
Alignment:
| Q |
13 |
aatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaacttgttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879695 |
aatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaacttgttc |
40879794 |
T |
|
| Q |
113 |
caacatagaagatttattgaaattaaagcaacaacttctgcttcacctatctcttcatgcatcacaactccttcatttctctcttgtaagtatactctta |
212 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879795 |
caacatagaagatttattgaaa-----gcgacaacttttgcttcacctatctcttcatgcatcacaactccttcatttctctcttgtaagtatactctta |
40879889 |
T |
|
| Q |
213 |
tgttatgtccctcacatttcccactaatccttgtaagtatactccaccaatatatatacctcacaacttctgcatcaccatttcacaatgtctttcacca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879890 |
tgttatgtccctcacatttcccactaatccttgtaagtatactccaccaatatatacacctcacaacttctgcatcaccatttcacaatgtctttcacca |
40879989 |
T |
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| Q |
313 |
aaagcaagtatgagagtgaaccccc |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
40879990 |
aaagcaagtatgagagtgaaccccc |
40880014 |
T |
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