View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_high_5 (Length: 316)

Name: NF2508_high_5
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2508_high_5
NF2508_high_5
[»] chr7 (19 HSPs)
chr7 (42-299)||(19643166-19643420)
chr7 (3-81)||(33845089-33845167)
chr7 (1-68)||(43807772-43807839)
chr7 (3-81)||(12007132-12007210)
chr7 (3-81)||(27570390-27570468)
chr7 (3-81)||(43081836-43081914)
chr7 (3-81)||(47448873-47448951)
chr7 (3-81)||(32777653-32777731)
chr7 (3-81)||(34978343-34978421)
chr7 (3-81)||(13152639-13152718)
chr7 (3-81)||(33057426-33057504)
chr7 (3-65)||(35098666-35098728)
chr7 (1-59)||(46880947-46881005)
chr7 (3-81)||(29723871-29723951)
chr7 (1-62)||(40854620-40854681)
chr7 (3-44)||(41985084-41985125)
chr7 (4-65)||(47684209-47684270)
chr7 (21-77)||(15325590-15325646)
chr7 (1-77)||(37352155-37352231)
[»] chr4 (25 HSPs)
chr4 (133-299)||(33918689-33918858)
chr4 (1-81)||(41262291-41262371)
chr4 (3-81)||(5386419-5386497)
chr4 (3-81)||(29227189-29227267)
chr4 (1-81)||(52204895-52204975)
chr4 (3-81)||(51255793-51255871)
chr4 (1-70)||(26600156-26600225)
chr4 (3-81)||(38519840-38519918)
chr4 (3-81)||(39158152-39158230)
chr4 (34-81)||(18316015-18316062)
chr4 (3-81)||(5932710-5932788)
chr4 (40-82)||(22813667-22813709)
chr4 (7-81)||(36130299-36130373)
chr4 (1-83)||(40348838-40348920)
chr4 (1-75)||(55266070-55266144)
chr4 (1-61)||(31574906-31574966)
chr4 (1-68)||(37297093-37297160)
chr4 (1-68)||(39440528-39440595)
chr4 (3-82)||(51577661-51577740)
chr4 (3-81)||(149431-149509)
chr4 (31-65)||(9393840-9393874)
chr4 (3-68)||(43175030-43175095)
chr4 (7-68)||(46634150-46634211)
chr4 (1-61)||(36177950-36178010)
chr4 (1-61)||(38381043-38381103)
[»] scaffold0618 (1 HSPs)
scaffold0618 (1-81)||(8899-8979)
[»] chr8 (20 HSPs)
chr8 (1-81)||(44090931-44091011)
chr8 (3-81)||(44061764-44061842)
chr8 (1-81)||(34435683-34435763)
chr8 (3-81)||(1068653-1068731)
chr8 (3-81)||(9629610-9629688)
chr8 (3-81)||(26026943-26027021)
chr8 (3-81)||(33451511-33451587)
chr8 (1-81)||(5600933-5601013)
chr8 (1-81)||(5639607-5639687)
chr8 (3-82)||(9630170-9630249)
chr8 (7-81)||(15716922-15716996)
chr8 (7-81)||(25987733-25987807)
chr8 (8-81)||(37172112-37172185)
chr8 (18-81)||(12241134-12241197)
chr8 (1-68)||(32501156-32501223)
chr8 (3-70)||(43397827-43397894)
chr8 (3-81)||(33107813-33107891)
chr8 (1-63)||(45405948-45406010)
chr8 (5-62)||(3413158-3413215)
chr8 (1-61)||(44825487-44825547)
[»] scaffold0201 (1 HSPs)
scaffold0201 (3-82)||(8519-8598)
[»] chr5 (16 HSPs)
chr5 (1-81)||(32872844-32872924)
chr5 (3-70)||(11954478-11954545)
chr5 (1-81)||(17097748-17097828)
chr5 (3-81)||(611911-611989)
chr5 (3-81)||(13089728-13089806)
chr5 (3-81)||(42446237-42446315)
chr5 (4-65)||(16972062-16972123)
chr5 (21-82)||(32478441-32478502)
chr5 (3-60)||(39195764-39195821)
chr5 (1-77)||(19981936-19982012)
chr5 (3-81)||(14532551-14532629)
chr5 (3-61)||(21210865-21210923)
chr5 (3-68)||(19521963-19522028)
chr5 (5-62)||(29463044-29463101)
chr5 (3-68)||(35646429-35646494)
chr5 (3-68)||(36738994-36739059)
[»] chr2 (19 HSPs)
chr2 (3-79)||(11965840-11965916)
chr2 (3-81)||(37316761-37316839)
chr2 (4-75)||(30831802-30831873)
chr2 (1-75)||(26481042-26481116)
chr2 (1-81)||(37731146-37731226)
chr2 (7-81)||(31578485-31578559)
chr2 (3-68)||(6511297-6511362)
chr2 (3-81)||(19916702-19916780)
chr2 (3-68)||(43057111-43057176)
chr2 (3-68)||(43487425-43487490)
chr2 (1-65)||(5361838-5361902)
chr2 (3-82)||(32944449-32944528)
chr2 (42-81)||(36587417-36587456)
chr2 (3-70)||(37003657-37003724)
chr2 (3-81)||(8847534-8847612)
chr2 (3-81)||(18510722-18510800)
chr2 (3-68)||(9207636-9207701)
chr2 (3-68)||(19109053-19109118)
chr2 (1-81)||(44239081-44239161)
[»] chr1 (15 HSPs)
chr1 (3-82)||(38878846-38878925)
chr1 (3-75)||(4213119-4213191)
chr1 (3-81)||(40439786-40439864)
chr1 (3-81)||(47642553-47642631)
chr1 (3-81)||(48983614-48983692)
chr1 (3-81)||(17082689-17082767)
chr1 (3-81)||(48858870-48858948)
chr1 (3-81)||(4857957-4858035)
chr1 (3-81)||(7919008-7919086)
chr1 (3-68)||(35369746-35369811)
chr1 (3-68)||(649815-649880)
chr1 (3-64)||(12657268-12657329)
chr1 (3-68)||(33100854-33100919)
chr1 (3-68)||(37274993-37275058)
chr1 (46-82)||(24806169-24806205)
[»] chr3 (26 HSPs)
chr3 (3-81)||(34307487-34307565)
chr3 (1-81)||(33472365-33472445)
chr3 (3-70)||(288772-288839)
chr3 (34-81)||(4494183-4494230)
chr3 (1-75)||(38671662-38671736)
chr3 (3-80)||(31104711-31104788)
chr3 (1-62)||(41443156-41443217)
chr3 (1-65)||(6178388-6178452)
chr3 (34-70)||(37503705-37503741)
chr3 (3-70)||(39713994-39714061)
chr3 (3-69)||(27168640-27168706)
chr3 (3-68)||(5114124-5114189)
chr3 (3-68)||(5244275-5244340)
chr3 (1-70)||(7934019-7934087)
chr3 (31-68)||(13735203-13735240)
chr3 (7-68)||(34064065-34064126)
chr3 (3-68)||(35597208-35597273)
chr3 (3-68)||(38926674-38926739)
chr3 (1-38)||(39540279-39540316)
chr3 (3-68)||(41505537-41505602)
chr3 (3-68)||(52254098-52254163)
chr3 (3-67)||(9692772-9692836)
chr3 (1-65)||(9753263-9753327)
chr3 (3-62)||(14207223-14207282)
chr3 (3-62)||(14214971-14215030)
chr3 (1-65)||(50314669-50314733)
[»] scaffold0432 (1 HSPs)
scaffold0432 (7-75)||(6472-6540)
[»] chr6 (9 HSPs)
chr6 (3-81)||(11635481-11635559)
chr6 (3-82)||(5739709-5739788)
chr6 (7-81)||(18065036-18065110)
chr6 (3-81)||(8645355-8645433)
chr6 (3-81)||(33712367-33712445)
chr6 (40-81)||(3772439-3772480)
chr6 (3-63)||(29459066-29459126)
chr6 (42-81)||(14910262-14910301)
chr6 (1-65)||(27612919-27612983)
[»] scaffold0110 (1 HSPs)
scaffold0110 (3-79)||(28275-28351)
[»] scaffold0276 (1 HSPs)
scaffold0276 (1-81)||(1689-1769)
[»] scaffold0085 (1 HSPs)
scaffold0085 (13-65)||(22816-22868)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 299
Target Start/End: Complemental strand, 19643420 - 19643166
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttctttaatcgtccaacaagttgatgtcagaggaaatgattgttcaaataatattgctcttttatt 141  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19643420 tctattgctttgatttttgtgtcactatccgaatttctttgatcgtccaacaagttgctgtcagaggaaatgattgttcaaataatattgctcttttatt 19643321  T
Q  142 atttattgtcaactccttccttctctaaaaaacacgaaacccaaatttcttcaccatctctctatcccaaggattcaagctctgacgaagtagtccttga 241  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  19643320 atttatcgtccactccttccatctctaaaaaacacgaaacccaaatttctt---catctctctatcccaaggattcaagctctgacgaagtagtccttga 19643224  T
Q  242 tctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19643223 tctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 19643166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33845089 - 33845167
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||| ||||||||||| ||| ||| ||| ||| ||||||||||||||||||||||| | ||||||||||    
T  33845089 tttctctttcatacacacattgttcttctactttttttctctgttgctttgatttttgtgtcactacctaaatttcttt 33845167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43807839 - 43807772
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||| ||||||||||||||||||||||  || ||||| ||||||||  |||||||||||||||||||    
T  43807839 attttttctctcatactcacattgttcttttactttctctttctattaatttgatttttgtgtcacta 43807772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 12007210 - 12007132
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  12007210 tttctctctcatactcacatgatcattctactttctctctctattgctttgatttttgtgccactatctaaatttcttt 12007132  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 27570390 - 27570468
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  27570390 tttctctctcatactcacatgatcattctactttttttctctattgctttgatttttgtgccactatcaaaatttcttt 27570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 43081914 - 43081836
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| |||| ||||||||||| ||| ||||| | ||||||||||| || |||||||||||| | ||||||||||    
T  43081914 tttctctcttatacacacattgttcttctactttctctctctattgctttaatatttgtgtcactacctaaatttcttt 43081836  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 47448873 - 47448951
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||||||||||  |  || ||||||| |||||||||||| |||||||| ||||| | ||||||||||    
T  47448873 tttctctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttcttt 47448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 32777731 - 32777653
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||| ||| || ||| ||||| | || ||| |||||||||||||| ||||| | ||||||||||    
T  32777731 tttctctctcatactcacactgtccttctactttctctctccattactttgatttttgtgccactacctaaatttcttt 32777653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 34978343 - 34978421
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||||||| |||||||| ||||| | ||||||||||    
T  34978343 tttctctctcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttcttt 34978421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13152639 - 13152718
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgc-tttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||| ||||||||||||| ||||| | ||||||||||    
T  13152639 tttctctctcatactcacattatccttttactttctctctctattgcttttgatttttgtgccactacctaaatttcttt 13152718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33057426 - 33057504
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| |||| |||||| |||||  ||||| ||||| | |||||||||||||||||||||| | || | ||||||||||    
T  33057426 tttctttctcttactcatattgtcttcctactttctctctctattgctttgatttttgtgttattacctaaatttcttt 33057504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 35098728 - 35098666
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||| ||||||||||||| |  |  || ||||| ||||||||||||||||||||||||||    
T  35098728 tttctctttcatactcacattctatttttactttctctttctattgctttgatttttgtgtca 35098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46880947 - 46881005
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgattttt 59  Q
    ||||||||||||||||||| |||||||| ||| | ||| | |||||| |||||||||||    
T  46880947 attttctctctcatactcatattgttcttctactatctctctctattactttgattttt 46881005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29723951 - 29723871
Alignment:
Q  3 tttctctctcatactcacattgttctcctattt--tctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  |  | ||||||  ||| | ||||||||||||||||||||  ||||||| ||||||||||    
T  29723951 tttctctctcatactcacatgatcattctattttctctctctctattgctttgatttttgtaccactatctaaatttcttt 29723871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40854681 - 40854620
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||||||||||||    
T  40854681 attttctctctcatactcacattatatttttactttctctctctattgctttgatttttgtg 40854620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 41985125 - 41985084
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttct 44  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  41985125 tttctctctcatactcacattattctcttattttctctttct 41985084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 47684209 - 47684270
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||| ||| ||||||||  || ||||||| ||||||  ||||||||||||||||    
T  47684209 ttctctctcatattcatattgttcttatactttctttctctattattttgatttttgtgtca 47684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 15325646 - 15325590
Alignment:
Q  21 attgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    |||||||| ||| ||||| | ||||||| ||| ||||||||||||||||| ||||||    
T  15325646 attgttcttctactttctctctctattgtttttatttttgtgtcactatctaaattt 15325590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37352155 - 37352231
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    ||||| ||||||||| ||||||||  || ||| ||||| | |||| || ||||||||||||||||||| | ||||||    
T  37352155 attttttctctcatattcacattgcccttctactttctctctctactgttttgatttttgtgtcactacctaaattt 37352231  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 33918858 - 33918689
Alignment:
Q  133 tcttttattatttattgtcaactccttccttctctaaaaaacacgaaaccc----aaatttcttcaccatctctctatcccaaggattcaagctctgacg 228  Q
    |||||||||||||||||||  |||||||| ||||| |||| || ||| |||    ||||||||||||||| ||||||||| | ||||||||||||| |||    
T  33918858 tcttttattatttattgtcccctccttccatctctgaaaa-caagaaccccttgaaaatttcttcaccatatctctatccaatggattcaagctctaacg 33918760  T
Q  229 aagtagtccttgatctctcacccatgataaaagtctacaaagacggtcacatagaaagactctcaggatcc 299  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  33918759 aagtagtccttgatctctcacccatgattaaaatctacaaagacggtcacatagaaagactcataggatcc 33918689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41262371 - 41262291
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| |||||||||||| || ||| ||||||| ||||||||||||||||||||| || |||| ||||||||||    
T  41262371 attttctctctcttactcacattgtccttctactttctttctctattgctttgatttttgtgccattatctaaatttcttt 41262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 5386419 - 5386497
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| ||||  || ||||| | |||||||||||||||||||||| |||||| ||||||||||    
T  5386419 tttctctctcatactcacattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttcttt 5386497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29227267 - 29227189
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||||||||| | ||||||||||    
T  29227267 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttcttt 29227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52204895 - 52204975
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| |||||||||||||||| | ||| ||||| | |||||||||||||||||||||||||||   ||||||||||    
T  52204895 attttctctttcatactcacattgtttttctactttctctctctattgctttgatttttgtgtcactacttaaatttcttt 52204975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 51255793 - 51255871
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  51255793 tttctctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatctaaatttcttt 51255871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26600225 - 26600156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||| ||||||||||| ||| ||||||| ||||||||||| ||| ||||| |||||||    
T  26600225 attttctctctcatacacacattgttcttctactttctttctctattgcttttattattgtgccactatc 26600156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 38519840 - 38519918
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| | ||||||||||||||||||||| ||||||  ||||||||||    
T  38519840 tttctctctcatactcacatgattattctactttctctctctattgctttgatttttgtgccactatttaaatttcttt 38519918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 39158152 - 39158230
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||| |||| |||||||| | ||| | ||||||||||    
T  39158152 tttctctctcatactcacattattcttctactttctctttctattgttttggtttttgtgccgctacctaaatttcttt 39158230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 18316015 - 18316062
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18316015 tttctctttctattgctttgatttttgtgtcactacctaaatttcttt 18316062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 5932788 - 5932710
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || | ||| | ||||||| ||||||||||||||||||| | ||||||||||    
T  5932788 tttctctctcatactcacattatccttttagtgtctctatctattgttttgatttttgtgtcactacctaaatttcttt 5932710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 22813709 - 22813667
Alignment:
Q  40 tttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  22813709 tttctattgctttgatttttgtgtcactacctaaatttcttta 22813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 36130373 - 36130299
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||||||||||| ||| ||| | | |||||||| ||||||||||||||| || | ||||||||||    
T  36130373 tctctcatacacacattgttcttctactttttctctctattgccttgatttttgtgtcattacctaaatttcttt 36130299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40348838 - 40348920
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttctttaa 83  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||||  | |||||||||    
T  40348838 attttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcactatctcattttctttaa 40348920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55266070 - 55266144
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||||||||||| ||||||||| ||  || ||||| | | |||| |||||||||||||||||||||| ||||    
T  55266070 attttctctctcatattcacattgtccttttactttctctctttattactttgatttttgtgtcactatctaaat 55266144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31574966 - 31574906
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||||||||| |  |  |||||||| | ||||||||||||||||||||    
T  31574966 attttctctctcatactcacattatatttttattttctctctctattgctttgatttttgt 31574906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37297093 - 37297160
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  37297093 attttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 37297160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39440528 - 39440595
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||| ||||||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  39440528 attttctctttcatactcacattttcattttactttctctctctattgctttgatttttgtgtcacta 39440595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 51577661 - 51577740
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||| ||| |  |  || ||||| | ||||||||||||||||||||| ||||| | |||||||||||    
T  51577661 tttctctctcatactcatattatcattttactttctctctctattgctttgatttttgtgccactacctaaatttcttta 51577740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 149509 - 149431
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  | | | ||||| | |||||||||||  |||||||||||||| | ||||||||||    
T  149509 tttctctctcatactcacattatgtttcaactttctctctctattgctttagtttttgtgtcactacctaaatttcttt 149431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 9393840 - 9393874
Alignment:
Q  31 tattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||| ||||||||||||||||||||||||||    
T  9393840 tattttctctttctattgctttgatttttgtgtca 9393874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43175030 - 43175095
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | ||||| |||||| ||||||||||||||    
T  43175030 tttctctctcatactcacattatttttttactttctctctctatggctttggtttttgtgtcacta 43175095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 46634150 - 46634211
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||| |  |  || ||||| |||||||| ||||||||||||||||||||    
T  46634150 tctctcatactcacattatctttttactttctctttctattactttgatttttgtgtcacta 46634211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36177950 - 36178010
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||||||||| |  |  || ||||||| |||||||||||| |||||||    
T  36177950 attttctctctcatactcacattatctttttactttctttctctattgctttggtttttgt 36178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38381103 - 38381043
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||||||||||||||| ||||| |  |  |||||||| | ||||||||||||||||||||    
T  38381103 attttctctctcatacttacattatgtttttattttctctctctattgctttgatttttgt 38381043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8979 - 8899
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||| | ||||||||||    
T  8979 attttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttcttt 8899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44090931 - 44091011
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||| | ||||||||||    
T  44090931 attttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttcttt 44091011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 44061764 - 44061842
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  44061764 tttctctctcatactcacattatcattttactttctctttctgttgctttgatttttgtgtcactatctaaatttcttt 44061842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34435763 - 34435683
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||  | |||||||||||||| |||||| ||||| | ||||||||||    
T  34435763 attttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttcttt 34435683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 1068653 - 1068731
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||  ||||| | ||||||||||    
T  1068653 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtaacactacctaaatttcttt 1068731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 9629610 - 9629688
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| || | |||||||| ||| ||| ||||||||||| |||||||||||||  | |||||||||||||||    
T  9629610 tttctctctcatgcttatattgttcttctactttttttttctattgttttgatttttgtgcaattatccaaatttcttt 9629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 26026943 - 26027021
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||| |  |  |||||||| ||||||||||||| |||||||| |||||||| ||||||||||    
T  26026943 tttctttctcatactcacattatcattttattttctctttctattgctttaatttttgtatcactatctaaatttcttt 26027021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 33451587 - 33451511
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||||| || ||| ||||| | ||||||||||||||||||||| ||||| || |||||||||    
T  33451587 tttctctctcatactcacattgt-cttctactttctctctctattgctttgatttttgtgccacta-cctaatttcttt 33451511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5601013 - 5600933
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||  || | ||| ||||| | | ||||||||||||||||||||||| ||| ||||||||||    
T  5601013 attttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttcttt 5600933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5639607 - 5639687
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||  || | ||| ||||| | | ||||||||||||||||||||||| ||| ||||||||||    
T  5639607 attttttctctcatactcacatgattattctactttctctctttattgctttgatttttgtgtcaccatctaaatttcttt 5639687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 9630170 - 9630249
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||| ||||||| | ||||| || ||||||||||| |||||| ||||||||||| | |||||| | |||||||||||    
T  9630170 tttctctttcatacttatattgtccttctattttctttctctatttctttgatttttatatcactacctaaatttcttta 9630249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 15716996 - 15716922
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||  |||||||||| ||| ||||| | |||||||||||||| ||||| |||||| | ||||||||||    
T  15716996 tctctcatacatacattgttcttctactttctctctctattgctttgatatttgtatcactacctaaatttcttt 15716922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 25987807 - 25987733
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| |  | ||| ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  25987807 tctctcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 25987733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 37172112 - 37172185
Alignment:
Q  8 ctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||| ||| || ||||||||| |||| ||| ||||||||||||||||| || | ||||||||||    
T  37172112 ctctcatacttacactgtccttctattttctctttccattactttgatttttgtgtcattacctaaatttcttt 37172185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12241134 - 12241197
Alignment:
Q  18 cacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||| |||  || | | |||||||||||||||||| |||||||||| ||||||||||    
T  12241134 cacattgttcttctacattatctctctattgctttgatttttatgtcactatctaaatttcttt 12241197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32501223 - 32501156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||||| || |  ||  |||| | |||||| ||||||||||||||||||||    
T  32501223 attttctctctcatactcacattatttttttacgttctctctctattactttgatttttgtgtcacta 32501156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 43397827 - 43397894
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||| || |  || ||||| |||||||| ||||| |||||||| |||||||    
T  43397827 tttctctctcatactcacattatttttttactttctctttctattactttggtttttgtgccactatc 43397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 33107891 - 33107813
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||| ||||||| ||||||||||| ||| ||||| | ||| |||||||||| ||||||  |||| | ||||||||||    
T  33107891 tttctccctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttcttt 33107813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45406010 - 45405948
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgt 63  Q
    ||||| ||||||||||||||||||  || ||| ||||| | ||||||| ||||||||||||||    
T  45406010 attttttctctcatactcacattgcccttctactttctctctctattgttttgatttttgtgt 45405948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3413215 - 3413158
Alignment:
Q  5 tctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||| |  |  || |||||||||||||||||||| ||||||||    
T  3413215 tctctctcatactcacattatatttttactttctttttctattgctttggtttttgtg 3413158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44825487 - 44825547
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    ||||| ||||||||||||||||| ||   ||| ||||| | ||||||||||||||||||||    
T  44825487 attttatctctcatactcacattatttatctactttctctctctattgctttgatttttgt 44825547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 8519 - 8598
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||||| | | |||||||||||    
T  8519 tttctctctcatactcacattgtccttctactttctctttctattgctttgatttttgtgtcaccaactaaatttcttta 8598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32872924 - 32872844
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| | ||||||||||||||||||| || ||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  32872924 attttctttttcatactcacattgttctcatactttctttttctattgctttgacttttgtgttactacctaaatttcttt 32872844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 11954478 - 11954545
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||| |  |||||||||| |||||| |||||||||||||| |||||||    
T  11954478 tttctctctcatactcacattgttattttattttctttctctattactttgatttttgtgccactatc 11954545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17097828 - 17097748
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||||||||||||||  | ||| ||||| |||||||| |||||||||||||||||||| | || |||||||    
T  17097828 attttctatctcatactcacattgtcattctactttctctttctattactttgatttttgtgtcactacctaattttcttt 17097748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 611911 - 611989
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  |||||||| | |||| |||||||||||||||||||||| | ||||||||||    
T  611911 tttctctctcatactcacattatcattttattttctctctctactgctttgatttttgtgtcactacctaaatttcttt 611989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13089806 - 13089728
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| ||||||||||||| |  | ||| ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  13089806 tttctctttcatactcacattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 13089728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 42446315 - 42446237
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| |||||||||||| || ||| ||| | | ||||||||||||||||||||| || || | ||||||||||    
T  42446315 tttctctctcttactcacattgtccttctactttttctctctattgctttgatttttgtgccattacctaaatttcttt 42446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 16972123 - 16972062
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||| | |||||||||| ||| ||||| | |||||| |||||||||||||||||    
T  16972123 ttctctctcatatttacattgttcttctactttctctctctattactttgatttttgtgtca 16972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 32478502 - 32478441
Alignment:
Q  21 attgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||| ||| ||||||||| | |||||||||||||||||| |||||||| | |||||||||||    
T  32478502 attgatcttctattttctctctctattgctttgatttttatgtcactacctaaatttcttta 32478441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39195764 - 39195821
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttg 60  Q
    ||||||||||||||  |||||||||| ||| ||||| | |||||||||||||||||||    
T  39195764 tttctctctcatacagacattgttcttctactttctctctctattgctttgatttttg 39195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19982012 - 19981936
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaattt 77  Q
    ||||| |||||||||||||   ||| || ||| ||||| |||||||| |||||||||||||| ||||||| ||||||    
T  19982012 attttttctctcatactcatggtgtccttctactttctctttctattactttgatttttgtgccactatctaaattt 19981936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 14532551 - 14532629
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||||| |||||||||||| || |||||||| ||| || ||||||||    
T  14532551 tttctctctcatactcacattttgtttttactttctttctctattgctttggttcttgtgtcaatattcatatttcttt 14532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 21210865 - 21210923
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgt 61  Q
    |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| ||||||||    
T  21210865 tttctctctcatacacacattattcttctactttctctctctattgctttaatttttgt 21210923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 19522028 - 19521963
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||| ||||||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  19522028 tttctctttcatactcacattatctttttactttctctctctattgctttgatttttgtgtcacta 19521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 29463044 - 29463101
Alignment:
Q  5 tctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||| |  |  |||||||| | |||||||||||||||||||||    
T  29463044 tctctctcatactcacattttgtttttattttctctctctattgctttgatttttgtg 29463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35646429 - 35646494
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | | |||||||||| ||||||||||||||    
T  35646429 tttctctctcatactcacattatttttttactttctctctatattgctttggtttttgtgtcacta 35646494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 36738994 - 36739059
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  36738994 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 36739059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 11965840 - 11965916
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttct 79  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||| ||||||||    
T  11965840 tttctctctcatacacacattgttcttctactttctctctctattgctttgatttttgtgccactatctaaatttct 11965916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 37316839 - 37316761
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||||||||| | ||||||||||    
T  37316839 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgtcactacctaaatttcttt 37316761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 30831802 - 30831873
Alignment:
Q  4 ttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||| ||||||| ||||    
T  30831802 ttctctctcatactcacattgttcttctactttctctctctattactttgatttttgtgccactatctaaat 30831873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26481116 - 26481042
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    ||||||| |||||||||||| ||||| | ||| ||||||| |||||| |||||||||||||||||||||| ||||    
T  26481116 attttctttctcatactcacgttgtttttctactttctttctctattactttgatttttgtgtcactatctaaat 26481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37731226 - 37731146
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||| ||||||||||| ||| ||||  | |||||||||||||| |||||| ||||| | ||||||||||    
T  37731226 attttctctctcatacacacattgttcttctactttcgctctctattgctttgatatttgtgccactacctaaatttcttt 37731146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 31578485 - 31578559
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| ||||  || ||| | | ||||||||||||||||||||||||||| | ||||||||||    
T  31578485 tctctcatactcacattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttcttt 31578559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 6511297 - 6511362
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  |||||||| |||||||||||||| ||||||||||||||    
T  6511297 tttctctctcatactcacattatctttttattttctctttctattgctttggtttttgtgtcacta 6511362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19916702 - 19916780
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||||||  |||||| |||||||||||  | ||||||||||    
T  19916702 tttctctctcatacacacattgttcttctactttctctctctattattttgatatttgtgtcactgcctaaatttcttt 19916780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43057111 - 43057176
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||| ||||||||||| |  |  |||||| ||| |||||||||||||||||||||||||||    
T  43057111 tttctctcttatactcacattatcattttattttttttctctattgctttgatttttgtgtcacta 43057176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43487425 - 43487490
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||||| |||||||| || |  || ||||||| |||||||||||| ||||||||||||||    
T  43487425 tttctctctcatgctcacattatttttttactttctttctctattgctttggtttttgtgtcacta 43487490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5361838 - 5361902
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||||||||||||| |||| |||||||||||    
T  5361838 attttctctctcatactcacattatatttttactttctttttctattgttttggtttttgtgtca 5361902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 32944528 - 32944449
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||||||||||| ||||||| | ||  || ||| | | ||||||||||||||||||||||||||| | |||||| ||||    
T  32944528 tttctctctcatagtcacattctccttttactttttctctctattgctttgatttttgtgtcactacctaaattttttta 32944449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 36587456 - 36587417
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  36587456 tctattgctttgatttttgtgccactatctaaatttcttt 36587417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 37003657 - 37003724
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||||| |||  |||| | | |||| ||||||||||| || |||||||    
T  37003657 tttctctctcatactcacattgttcttctacattctctctttattactttgatttttatgccactatc 37003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 8847534 - 8847612
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| |||||||| |||||| |||| ||| ||||| | |||||||||||||| ||| |  ||||||| ||||||||||    
T  8847534 tttctttctcatacacacattattcttctactttctctctctattgctttgatatttataccactatctaaatttcttt 8847612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 18510722 - 18510800
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||| ||||| |||||||||||| || ||| ||||| | |||| | ||||||||||||||||| || | ||||||||||    
T  18510722 tttccctctcttactcacattgtccttctactttctctctctacttctttgatttttgtgtcattacctaaatttcttt 18510800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 9207636 - 9207701
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| |||||||| |||||    
T  9207636 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 9207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 19109118 - 19109053
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||| ||||| |  |  |||||||| | ||||||||||||||||||||| |||||    
T  19109118 tttctctctcatacttacattatctttttattttctctctctattgctttgatttttgtgccacta 19109053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44239081 - 44239161
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| | ||| ||||||| || |  |||||| | | ||||||||||||||||||||||||||  | ||||||||||    
T  44239081 attttctcttttatattcacattattattttattttatctctctattgctttgatttttgtgtcactgcctaaatttcttt 44239161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 38878925 - 38878846
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||||||||||||  ||||||||||| ||| ||| | ||||||||||||||||||||||||||||| | |||||||||||    
T  38878925 tttctctctcatatacacattgttcttctactttttctttctattgctttgatttttgtgtcactacctaaatttcttta 38878846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 4213119 - 4213191
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||||||||||||||||| |||  |||| | |||||| |||||||||||||||||||||| ||||    
T  4213119 tttctctctcatactcacattgttcttctaccttctctctctattactttgatttttgtgtcactatctaaat 4213191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 40439864 - 40439786
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||| ||||| | ||||||||||    
T  40439864 tttctctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgacactacctaaatttcttt 40439786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 47642631 - 47642553
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || ||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  47642631 tttctctctcatactcacattatcatattactttctctttctattgctttaatttttgtgtcactatctaaatttcttt 47642553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48983692 - 48983614
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||  || | ||| ||||| ||||||||||||||||||||||| || |||| ||||||||||    
T  48983692 tttctctctcatactcacatgattattctactttctctttctattgctttgatttttgtgccattatctaaatttcttt 48983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 17082767 - 17082689
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| |||||| |||| ||||||||| | |||||| ||||||| |||||| ||||| | ||||||||||    
T  17082767 tttctctctcatacacacattattcttctattttctctctctattactttgatatttgtgccactacctaaatttcttt 17082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 48858870 - 48858948
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| |  |  || || || | ||||||||||||||||||||||||||||| ||||||||||    
T  48858870 tttctctctcatactcacattatcattttacttcctctctctattgctttgatttttgtgtcactatctaaatttcttt 48858948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 4857957 - 4858035
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||| | ||||||||||| ||| ||||| | |||||||||||||| |||||| |||||   ||||||||||    
T  4857957 tttctctctcatgcacacattgttcttctactttctctctctattgctttgatatttgtgccactacttaaatttcttt 4858035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 7919086 - 7919008
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||| ||||| || ||| ||| | | |||||| |||||||||||||| ||||| | ||||||||||    
T  7919086 tttctctctcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttcttt 7919008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35369746 - 35369811
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||| |||||||||||||||||  |  || ||||| | |||||||||||||||||||||||||||    
T  35369746 tttctatctcatactcacattgtctttttactttctctctctattgctttgatttttgtgtcacta 35369811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 649815 - 649880
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  649815 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 649880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 12657268 - 12657329
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtc 64  Q
    ||||||||||||||||||||| |  |  || ||||| |||||||||||||| ||||||||||    
T  12657268 tttctctctcatactcacattatctttttactttctctttctattgctttggtttttgtgtc 12657329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33100854 - 33100919
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | ||||||| |||||||||||||||||||    
T  33100854 tttctctctcatactcacattatctttttactttctctctctattgttttgatttttgtgtcacta 33100919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37275058 - 37274993
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||| ||||||||||||| |  |  || ||||||| |||||||||||| ||||||||||||||    
T  37275058 tttctctttcatactcacattatctttttactttctttctctattgctttggtttttgtgtcacta 37274993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 24806205 - 24806169
Alignment:
Q  46 ttgctttgatttttgtgtcactatccaaatttcttta 82  Q
    |||||||||||||||||||||| || |||||||||||    
T  24806205 ttgctttgatttttgtgtcactgtctaaatttcttta 24806169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 34307565 - 34307487
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| |||||| | ||||||||||    
T  34307565 tttctctttcatactcacattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttcttt 34307487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33472445 - 33472365
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||| ||| ||||||||  || |||||||||||||| ||||||||||||| |||||||| |||| |||||    
T  33472445 attttctctctcatattcatattgttcttttactttctttttctattactttgatttttgtatcactatctaaatctcttt 33472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 288772 - 288839
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| ||||||||||||||||    
T  288772 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgtcactatc 288839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 4494230 - 4494183
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  4494230 tttctctttctattgctttgatttttgtgtcactacctaaatttcttt 4494183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38671662 - 38671736
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||| |||||||||||||||  || ||| ||| |||||| |||| |||||||| |||||||| ||||    
T  38671662 attttctctctcgtactcacattgttcttatactttatttctctattactttaatttttgtatcactatctaaat 38671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 31104711 - 31104788
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttctt 80  Q
    ||||||| ||||| | ||||||| || ||| ||||| | ||||||| ||||||||||||||||||| | |||||||||    
T  31104711 tttctctttcatattaacattgtccttctactttctctctctattgttttgatttttgtgtcactacctaaatttctt 31104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41443217 - 41443156
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||||| ||||  || ||||| | ||||||| |||||||||||||    
T  41443217 attttctctctcatactcacattattcttttactttctctctctattgttttgatttttgtg 41443156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6178452 - 6178388
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||| | ||||||||||||||||||||||||    
T  6178452 attttctctctcatactcacattatgtttttactttctctctctattgctttgatttttgtgtca 6178388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 37503741 - 37503705
Alignment:
Q  34 tttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37503741 tttctttttctattgctttgatttttgtgtcaatatc 37503705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 39714061 - 39713994
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    |||||| || ||| ||||||||||||  || ||||| | |||||||||||||||||||||| ||||||    
T  39714061 tttctcccttataatcacattgttcttatactttctctctctattgctttgatttttgtgttactatc 39713994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27168706 - 27168640
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactat 69  Q
    ||||||||||||||||| ||| |||| ||| || || | |||||| |||||||||||||| ||||||    
T  27168706 tttctctctcatactcatattattcttctacttcctctctctattactttgatttttgtgccactat 27168640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5114124 - 5114189
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||| ||||||||| |  |  || ||||| | |||||||||||||||||||||||||||    
T  5114124 tttctctctcacactcacattatctttttactttctctctctattgctttgatttttgtgtcacta 5114189  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5244275 - 5244340
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | |||||||||||| |||||||| |||||    
T  5244275 tttctctctcatactcacattatttttttactttctctctctattgctttggtttttgtgccacta 5244340  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7934019 - 7934087
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatc 70  Q
    ||||||||||||||||||||||| |  || || ||||| ||| |||||||||| ||||| ||||||||||    
T  7934019 attttctctctcatactcacattatcttcttactttctctttttattgctttggttttt-tgtcactatc 7934087  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13735203 - 13735240
Alignment:
Q  31 tattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  13735203 tattttctttctctattgctttggtttttgtgtcacta 13735240  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 34064126 - 34064065
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||| || | ||| ||||||| |||||| ||||||||||| | ||||||    
T  34064126 tctctcatactcacattatttttctactttctttctctattactttgatttttatatcacta 34064065  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35597208 - 35597273
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| || |  || ||||| | ||||||| |||| ||||||||||||||    
T  35597208 tttctctctcatactcacattatttttttactttctctctctattgttttggtttttgtgtcacta 35597273  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 38926674 - 38926739
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  38926674 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 38926739  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39540279 - 39540316
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttct 38  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  39540279 attttctctctcatactcacattattctcttattttct 39540316  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 41505537 - 41505602
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    ||||||||||||||||||||| |  |  || ||||| | |||||||||||| ||||||||||||||    
T  41505537 tttctctctcatactcacattatctttttactttctctctctattgctttggtttttgtgtcacta 41505602  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 52254163 - 52254098
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcacta 68  Q
    |||||||||||||||| ||||||  |  || ||||| | |||||||||||| ||||||||||||||    
T  52254163 tttctctctcatactcgcattgtctttttactttctctctctattgctttggtttttgtgtcacta 52254098  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 9692772 - 9692836
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcact 67  Q
    ||||||||||||| ||||||| |  |  || ||||| | ||||||||||||||||||||||||||    
T  9692772 tttctctctcatattcacattatcattttactttctctctctattgctttgatttttgtgtcact 9692836  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9753263 - 9753327
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||| |||||||||||||||||||  |  |||||||| | ||||||| |||| |||||||||||    
T  9753263 attttatctctcatactcacattgtgtttttattttctctatctattgttttggtttttgtgtca 9753327  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14207282 - 14207223
Alignment:
Q  3 tttctctctcatactcacattgt-tctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||| | ||| | ||||||| | |||||||||||||||||||||    
T  14207282 tttctctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtg 14207223  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 14215030 - 14214971
Alignment:
Q  3 tttctctctcatactcacattgt-tctcctattttctttttctattgctttgatttttgtg 62  Q
    ||||||||||||||||||||| | ||| | ||||||| | |||||||||||||||||||||    
T  14215030 tttctctctcatactcacattatgtcttc-attttctctctctattgctttgatttttgtg 14214971  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50314669 - 50314733
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||||||||||| |  |  || ||||| | |||||| |||||||||||||||||    
T  50314669 attttctctctcatactcacattatgtttttactttctctctctattactttgatttttgtgtca 50314733  T

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Target: scaffold0432 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 6540 - 6472
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaat 75  Q
    |||||||||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||| ||||    
T  6540 tctctcatactcacattgttcttctactttctctctctattactttgatttttgtgtcactatctaaat 6472  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 11635559 - 11635481
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||| |||||||| ||| ||||||||| | |||||| |||||||||||||| ||||||| |||| |||||    
T  11635559 tttctctctcatattcacattgctcttctattttctctctctattactttgatttttgtgccactatctaaatctcttt 11635481  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 5739788 - 5739709
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttta 82  Q
    ||||| ||| ||||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||| | || ||||||||    
T  5739788 tttctttcttatactcatattgtccttctaatttctctttctattgctttgatttttgtgtcactacctaattttcttta 5739709  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 18065110 - 18065036
Alignment:
Q  7 tctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||| ||||||||||| ||| ||||| | |||||||||||||| |||||| ||||| | ||||||||||    
T  18065110 tctctcatacacacattgttcttctactttctctctctattgctttgatatttgtgccactacctaaatttcttt 18065036  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 8645355 - 8645433
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||| | ||  || ||||| | |||||||||||||||| || ||||||| | ||||||||||    
T  8645355 tttctctctcatactcacattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttcttt 8645433  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 33712367 - 33712445
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||| ||||||||||| ||| ||||| | ||| |||||||||| ||||||  |||| | ||||||||||    
T  33712367 tttctctctcatacacacattgttcttctactttctctctctgttgctttgatatttgtgcaactacctaaatttcttt 33712445  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 3772439 - 3772480
Alignment:
Q  40 tttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  3772439 tttctattgatttgatttttgtgtcactatctaaatttcttt 3772480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 29459126 - 29459066
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgt 63  Q
    |||||||||| |||||||||| |  ||  ||||||||| ||||||||||||||||||||||    
T  29459126 tttctctctcgtactcacattatgttctcattttctttctctattgctttgatttttgtgt 29459066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 14910262 - 14910301
Alignment:
Q  42 tctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  14910262 tctattgctttgatttttgtgtcactacctaaatttcttt 14910301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27612919 - 27612983
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    ||||||||||||||| ||||||| |  |  |||| |||||||||||| |||||||||| ||||||    
T  27612919 attttctctctcatattcacattatatttttattatctttttctattactttgattttcgtgtca 27612983  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 28351 - 28275
Alignment:
Q  3 tttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttct 79  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||||| ||||||||||| || ||||||  ||||||||    
T  28351 tttctctctcatacacacattgttcttctactttctctctctattactttgatttttatgccactatataaatttct 28275  T

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Target: scaffold0276 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1689 - 1769
Alignment:
Q  1 attttctctctcatactcacattgttctcctattttctttttctattgctttgatttttgtgtcactatccaaatttcttt 81  Q
    |||||||||||||||||| |||| |  |  || ||||| | | ||||||||||||||||||| ||||||| ||||||||||    
T  1689 attttctctctcatactctcattatcattttactttctctctttattgctttgatttttgtgccactatctaaatttcttt 1769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 22868 - 22816
Alignment:
Q  13 atactcacattgttctcctattttctttttctattgctttgatttttgtgtca 65  Q
    |||||||||||||| |  || ||||| |||||||||||||| |||||||||||    
T  22868 atactcacattgtttttttaatttctctttctattgctttggtttttgtgtca 22816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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