View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_high_6 (Length: 314)

Name: NF2508_high_6
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2508_high_6
NF2508_high_6
[»] chr1 (11 HSPs)
chr1 (1-232)||(40804588-40804819)
chr1 (4-92)||(12033620-12033708)
chr1 (128-216)||(23987663-23987751)
chr1 (95-192)||(13443927-13444024)
chr1 (256-301)||(44090982-44091027)
chr1 (4-75)||(13444074-13444146)
chr1 (147-198)||(8967736-8967787)
chr1 (130-199)||(9199183-9199252)
chr1 (236-285)||(11076937-11076986)
chr1 (5-69)||(50857536-50857600)
chr1 (128-188)||(28660689-28660749)
[»] chr6 (8 HSPs)
chr6 (5-196)||(11190432-11190622)
chr6 (130-222)||(24442981-24443073)
chr6 (4-73)||(3565668-3565737)
chr6 (131-191)||(18718139-18718199)
chr6 (8-58)||(2339152-2339202)
chr6 (4-69)||(29340898-29340964)
chr6 (128-192)||(8048904-8048968)
chr6 (16-125)||(13645845-13645955)
[»] chr4 (16 HSPs)
chr4 (230-301)||(13713962-13714033)
chr4 (13-122)||(19684772-19684882)
chr4 (236-301)||(32736711-32736776)
chr4 (5-69)||(2053100-2053164)
chr4 (4-60)||(9596873-9596929)
chr4 (147-199)||(22691334-22691386)
chr4 (4-74)||(22691242-22691313)
chr4 (4-69)||(22716589-22716655)
chr4 (4-69)||(22988562-22988628)
chr4 (4-69)||(4053078-4053143)
chr4 (8-66)||(38223123-38223179)
chr4 (128-199)||(54700529-54700600)
chr4 (5-121)||(13085131-13085248)
chr4 (4-74)||(34949077-34949147)
chr4 (5-69)||(6659422-6659486)
chr4 (5-73)||(13086223-13086291)
[»] chr7 (15 HSPs)
chr7 (95-220)||(4300530-4300656)
chr7 (20-192)||(22572356-22572530)
chr7 (4-109)||(31577234-31577340)
chr7 (4-92)||(4668235-4668323)
chr7 (114-194)||(13886094-13886175)
chr7 (130-196)||(1220374-1220440)
chr7 (150-196)||(1883598-1883644)
chr7 (128-169)||(1365757-1365798)
chr7 (4-69)||(859248-859314)
chr7 (4-69)||(1217252-1217318)
chr7 (5-125)||(5678248-5678368)
chr7 (5-125)||(5703300-5703420)
chr7 (128-217)||(24840223-24840312)
chr7 (5-119)||(4303383-4303498)
chr7 (6-69)||(13886280-13886343)
[»] chr3 (17 HSPs)
chr3 (4-122)||(4580494-4580613)
chr3 (4-130)||(20398430-20398557)
chr3 (114-192)||(43306611-43306688)
chr3 (4-73)||(41218735-41218804)
chr3 (114-192)||(3068813-3068891)
chr3 (4-125)||(39913264-39913386)
chr3 (4-69)||(43304052-43304118)
chr3 (4-69)||(53012957-53013023)
chr3 (4-69)||(43306764-43306830)
chr3 (8-60)||(33620108-33620160)
chr3 (4-69)||(3063829-3063895)
chr3 (4-69)||(3068967-3069033)
chr3 (4-121)||(19949934-19950052)
chr3 (5-69)||(5128842-5128906)
chr3 (4-53)||(25857723-25857772)
chr3 (128-199)||(368805-368873)
chr3 (5-69)||(40593535-40593598)
[»] chr8 (17 HSPs)
chr8 (5-192)||(18180651-18180839)
chr8 (236-301)||(33071741-33071806)
chr8 (115-196)||(22511981-22512061)
chr8 (115-196)||(22519281-22519361)
chr8 (127-199)||(2687827-2687899)
chr8 (127-192)||(26374985-26375050)
chr8 (128-192)||(42890477-42890540)
chr8 (114-193)||(37189939-37190018)
chr8 (4-69)||(23570515-23570581)
chr8 (95-199)||(16598303-16598407)
chr8 (20-125)||(15081518-15081624)
chr8 (4-69)||(23573514-23573580)
chr8 (4-44)||(26150621-26150661)
chr8 (236-295)||(16977971-16978030)
chr8 (114-163)||(2189689-2189738)
chr8 (5-65)||(22512142-22512202)
chr8 (5-69)||(22921942-22922006)
[»] chr5 (5 HSPs)
chr5 (235-301)||(6655564-6655630)
chr5 (95-194)||(19497240-19497339)
chr5 (4-122)||(19677169-19677288)
chr5 (114-196)||(21848899-21848981)
chr5 (132-199)||(9868334-9868400)
[»] scaffold0240 (3 HSPs)
scaffold0240 (128-220)||(16131-16223)
scaffold0240 (130-221)||(1747-1837)
scaffold0240 (128-169)||(14932-14973)
[»] chr2 (12 HSPs)
chr2 (114-192)||(27956093-27956170)
chr2 (128-192)||(33051705-33051769)
chr2 (128-192)||(32163710-32163774)
chr2 (4-69)||(22011367-22011433)
chr2 (5-117)||(8781447-8781558)
chr2 (128-193)||(23456639-23456704)
chr2 (114-191)||(31634177-31634254)
chr2 (15-96)||(44675287-44675368)
chr2 (13-125)||(18725629-18725742)
chr2 (128-191)||(28737991-28738054)
chr2 (114-163)||(36647365-36647414)
chr2 (4-75)||(2155898-2155970)
[»] scaffold0531 (1 HSPs)
scaffold0531 (128-192)||(11527-11591)
[»] scaffold0330 (1 HSPs)
scaffold0330 (130-221)||(17729-17819)
[»] scaffold0090 (1 HSPs)
scaffold0090 (128-196)||(15013-15081)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 40804588 - 40804819
Alignment:
Q  1 aatatattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgttagcg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  40804588 aatatattcgagacttttctctcaattctggtggattttggaaacccgtatttgataggtttgtcgcttgcaatctttttgcttatcttttatgttagcg 40804687  T
Q  101 cttgttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgact 200  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  40804688 cttgctaactcttgcttccgttctggatcagttggtatcagtccatgtttctcctgttcttttcctaacgcgatcagccatgggagatcaaccagtgact 40804787  T
Q  201 aaaatcgcgactttaactgcgatgatcaaaac 232  Q
    ||||||||||||||||||||||||||||||||    
T  40804788 aaaatcgcgactttaactgcgatgatcaaaac 40804819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 12033708 - 12033620
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatctttta 92  Q
    ||||||||||||||||||||||||||| |||||| || ||||||  |||||||| || |||||||| |||  | |||| ||||||||||    
T  12033708 atattcgagacttttctctcaattctaatggattatgtaaaccctcatttgataagtttgtcgcttgcaacttgtttgtttatctttta 12033620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 23987663 - 23987751
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaa 216  Q
    ||||||||||| | | || ||||||| ||||||||||||| || |||||  ||||||||||||||||||||| ||| || |||||||||    
T  23987663 tcagttggtattaaagcaggtttctcttgttcttttcctagcgtgatcaggcatgggagatcaaccggtgacgaaagtcacgactttaa 23987751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 13444024 - 13443927
Alignment:
Q  95 ttagcgcttgttaactct-tgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    |||| |||||||||| || ||||||||  |||  ||||||||||||||| || |||| || |||||||||||||||| ||||| |||||||||||||||    
T  13444024 ttagtgcttgttaaccctatgcttccgaactgcgtcagttggtatcagagcaggtttatcatgttcttttcctaacg-gatcagccatgggagatcaac 13443927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 44090982 - 44091027
Alignment:
Q  256 ccccagatgccatggcatcccccaagattgttatatatatgatatt 301  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||    
T  44090982 ccccaggtgccatggcatcccctaagattgctatatatatgatatt 44091027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 13444146 - 13444074
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgcttacaatc 75  Q
    ||||| |||||||||||||||||||| |||||||  |||||||| || ||||||| || |||||||| |||||    
T  13444146 atattagagacttttctctcaattctggtggattacggaaacccttattttgatatgtttgtcgcttgcaatc 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 8967787 - 8967736
Alignment:
Q  147 gtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtga 198  Q
    ||||||||||| |||||| ||| | ||||| |||||||||||||||||||||    
T  8967787 gtttctcctgtccttttcgtaatgtgatcagccatgggagatcaaccggtga 8967736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 9199252 - 9199183
Alignment:
Q  130 agttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    |||| |||||||| || | || ||||||||||||| ||||  | ||||||||||||| ||||||||||||    
T  9199252 agtttgtatcagagcaggcttttcctgttcttttcgtaacatgttcaaccatgggagttcaaccggtgac 9199183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 11076937 - 11076986
Alignment:
Q  236 gggcggatctttgttgagacccccagatgccatggcatcccccaagattg 285  Q
    |||||||||| ||| ||||||  |||||||||||||||||||||| ||||    
T  11076937 gggcggatctatgtagagaccaacagatgccatggcatcccccaatattg 11076986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 50857600 - 50857536
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||| ||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  50857600 tattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 50857536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 28660749 - 28660689
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagat 188  Q
    |||||||||||||||  | ||||  | |||||||||||||||| |||||| ||||||||||    
T  28660749 tcagttggtatcagagtaggttttccatgttcttttcctaacgtgatcaatcatgggagat 28660689  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 11190432 - 11190622
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgctt 103  Q
    ||||||||| ||||||||||||||| |||||||  |||||||  |||||||||||| |||||||| ||| || | |  |||| ||||| ||| || | ||    
T  11190432 tattcgaga-ttttctctcaattctggtggattccggaaacct-tatttgataggtttgtcgcttgcaacctgtctctttatattttaggtttagtgttt 11190529  T
Q  104 gttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    | |||| |||||||||||  ||  ||||||||||||||| || ||||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  11190530 gctaacccttgcttccgtattgcttcagttggtatcagagcaggtttctcctgttcgtttcctaacgtgatcagccataggagatcaaccggt 11190622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 24443073 - 24442981
Alignment:
Q  130 agttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaactgcga 222  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||| ||||||||| |||| |||||| |  ||||||||||||    
T  24443073 agttggtatcagagcatgtttctcttgttcttttcctaacgtgatcagccatgggcgatcaaccgatgacgaaaatcacagctttaactgcga 24442981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3565668 - 3565737
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaa 73  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| | ||||||||||    
T  3565668 atattcgagacttttctctcaattctggtggattttggaaactcttatttgataggtttatcgcttacaa 3565737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 18718199 - 18718139
Alignment:
Q  131 gttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaa 191  Q
    |||||||||||| || |||||||||||||||||||||||  ||||| ||||||||||||||    
T  18718199 gttggtatcagagcaggtttctcctgttcttttcctaacatgatcagccatgggagatcaa 18718139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 2339202 - 2339152
Alignment:
Q  8 tcgagacttttctctcaattctagtggattttggaaacccgtatttgatag 58  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||||||||    
T  2339202 tcgagacttttctctcaattctggtggatttcggaaacccttatttgatag 2339152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 29340964 - 29340898
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||||||||||||||||||||||||||||  |||||||  || |||||||||| ||||||||    
T  29340964 atattcgagacttttctctcaattctagtggattccggaaacctttattttgataggtttgtcgctt 29340898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 8048968 - 8048904
Alignment:
Q  128 tcagttggtatcagatcatg-tttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  8048968 tcagttggtatcagagcatggtttctcctgttcttttcctaacg-gattagccatgggagatcaac 8048904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 13645955 - 13645845
Alignment:
Q  16 tttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgcttgttaactcttg 114  Q
    ||||||||||||||  | ||||  |||||||| ||||| |||||| ||| |||| |||||| | || |||||||||| | | |||||||| |||| ||||    
T  13645955 tttctctcaattctgttagattccggaaacccttatttaataggtttgttgcttgcaatctgtctgtttatcttttaggctaagcgcttgctaacccttg 13645856  T
Q  115 cttccgttctg 125  Q
    ||||| |||||    
T  13645855 cttccattctg 13645845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 13713962 - 13714033
Alignment:
Q  230 aaccatgggcggatctttgttgagacccccagatgccatggcatcccccaagattgttatatatatgatatt 301  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  13713962 aaccaggggcggatctttgttgagacccccaggtaccatggcatcccccaagattgttatatatatgatatt 13714033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 19684882 - 19684772
Alignment:
Q  13 acttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgcttgttaactc 111  Q
    |||||||||||||||||| || ||| ||||||||| | |||||||||| |||||||| ||| || | || |||||||||| | |||||||||| |||| |    
T  19684882 acttttctctcaattctattgaattctggaaacccttgtttgataggtttgtcgcttgcaaactgtctgtttatcttttaggtttagcgcttgctaaccc 19684783  T
Q  112 ttgcttccgtt 122  Q
    ||| |||||||    
T  19684782 ttgtttccgtt 19684772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 32736711 - 32736776
Alignment:
Q  236 gggcggatctttgttgagacccccagatgccatggcatcccccaagattgttatatatatgatatt 301  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||| |||  |||||||||||||||    
T  32736711 gggcggatctatgtagagacccccaggtgccatggcatcccccaatattactatatatatgatatt 32736776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 2053164 - 2053100
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgctt 69  Q
    ||||||||||||||  |||||||||||||||||| |||||||| |||||||||| | ||||||||    
T  2053164 tattcgagactttttcctcaattctagtggatttcggaaacccttatttgatagatttgtcgctt 2053100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 9596873 - 9596929
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggt 60  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  9596873 atatttgagacttttctctcaattctggtggattatggaaacccttatttgataggt 9596929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 22691334 - 22691386
Alignment:
Q  147 gtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  22691334 gtttctcctgttcttttcctaaagtgatcagccatgggagatcaactggtgac 22691386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 22691242 - 22691313
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtattt-gataggtctgtcgcttacaat 74  Q
    |||||| ||||||||||||||||||| |||||||  |||||||| ||||| ||||||| |||||||| ||||    
T  22691242 atattcaagacttttctctcaattctggtggattccggaaacccttatttcgataggtttgtcgcttgcaat 22691313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22716589 - 22716655
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaaccc-gtatttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| |||||||  ||||||||  | |||||||||| ||||||||    
T  22716589 atattcgagacttttctctcaattctggtggattccggaaaccctttttttgataggtttgtcgctt 22716655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 22988628 - 22988562
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtattt-gataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| |||||||  |||||||| | ||| ||||||| ||||||||    
T  22988628 atattcgagacttttctctcaattctggtggattccggaaacccttttttcgataggtttgtcgctt 22988562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 4053078 - 4053143
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||| | |||||||| | ||| || || ||||||||| ||||||||    
T  4053078 atattcgagacttttctctcaattatggtggatttcgaaaatccttacttgataggtttgtcgctt 4053143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 38223179 - 38223123
Alignment:
Q  8 tcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcg 66  Q
    ||||||||||||||  |||||||||||||| || |||||| |||||||||||| |||||    
T  38223179 tcgagacttttctc--aattctagtggattctgtaaacccttatttgataggtttgtcg 38223123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 54700600 - 54700529
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    ||||||||||||||| || |||||||||| | |||||| |||| |||||  |||  ||||||||||||||||    
T  54700600 tcagttggtatcagagcaggtttctcctgattttttcccaacgtgatcagtcattagagatcaaccggtgac 54700529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 13085248 - 13085131
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtattt-gataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgct 102  Q
    ||||||||| ||||||||||||| | |||||||  | |||||| ||||| ||||||| |||||||| ||| || |  | |||||||||| ||| ||||||    
T  13085248 tattcgaga-ttttctctcaattttggtggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgct 13085150  T
Q  103 tgttaactcttgcttccgt 121  Q
    ||  |||||||||||||||    
T  13085149 tgcgaactcttgcttccgt 13085131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 34949147 - 34949077
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaat 74  Q
    |||||||||||||||||||||| ||  ||||||||  |||||||  |||| |||||| | |||||||||||    
T  34949147 atattcgagacttttctctcaaatcgggtggatttcagaaaccctaatttaataggtttatcgcttacaat 34949077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 6659486 - 6659422
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||| ||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  6659486 tattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 6659422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13086291 - 13086223
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtattt-gataggtctgtcgcttacaa 73  Q
    ||||||||| |||||||||||||||| |||||| || |||| | ||||| ||||||| ||||||||||||    
T  13086291 tattcgaga-ttttctctcaattctaatggattctgaaaactcttattttgataggtttgtcgcttacaa 13086223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 4300530 - 4300656
Alignment:
Q  95 ttagcgcttg-ttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaacc 193  Q
    |||||||||| |||||  |||||||||| |||  ||||||||||||||| || |||||||| ||||||||||||| | ||||| ||||| ||||||||||    
T  4300530 ttagcgcttgcttaacctttgcttccgtactgcgtcagttggtatcagagcaggtttctccagttcttttcctaatgtgatcagccatgagagatcaacc 4300629  T
Q  194 ggtgactaaaatcgcgactttaactgc 220  Q
     ||||| ||||||||| ||||||||||    
T  4300630 agtgacaaaaatcgcggctttaactgc 4300656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 22572530 - 22572356
Alignment:
Q  20 tctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgcttgttaactcttgcttc 118  Q
    |||||||||| |||||||  |||||||| |||||||||| | |||||||| ||| || | || |||||||||| ||| |||||||| |||  ||||||||    
T  22572530 tctcaattcttgtggattccggaaacccttatttgatagatttgtcgcttgcaacctgtctgtttatcttttaggtttagcgcttgctaatccttgcttc 22572431  T
Q  119 cgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcga-tcaaccatgggagatcaac 192  Q
    |||||||  |||||||| |||||| || ||||| | |||||||||   |||| || ||||||||| |||||||||    
T  22572430 cgttctgcgtcagttggcatcagagcaggtttcccatgttcttttgtgaacgtgattcaaccatgagagatcaac 22572356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 31577340 - 31577234
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    |||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||| ||| || | || |||||||||| | ||||||||    
T  31577340 atattcaagacttttctctcaattctggtggatttcggaaacccttatttgataggtttgtcgcttgcaacctatctgtttatcttttaggtttagcgct 31577241  T
Q  103 tgttaac 109  Q
    || ||||    
T  31577240 tgctaac 31577234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 4668323 - 4668235
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatctttta 92  Q
    ||||||||||||||||||| |||||  ||||||| ||||||||| ||||| |||||| |||||||||||  |||| || ||||||||||    
T  4668323 atattcgagacttttctcttaattcaggtggattatggaaacccttatttaataggtttgtcgcttacatcctttctgtttatctttta 4668235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 13886175 - 13886094
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttctttt-cctaacgcgatcaaccatgggagatcaaccg 194  Q
    |||||||| |||  ||||||||||| ||| || ||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  13886175 gcttccgtactgcgtcagttggtattagagcaggtttctcctgttcttttccctaacgtgatcagccatgggagatcaaccg 13886094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 1220440 - 1220374
Alignment:
Q  130 agttggtatcagatcatg-tttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    ||||||||||||| | || ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1220440 agttggtatcagagcctggtttctcctgttcttttcctaacg-gatcagccatgggagatcaaccggt 1220374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 1883598 - 1883644
Alignment:
Q  150 tctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||    
T  1883598 tctcctgttcttttcctaacgtgatcagtcatgggagatcaaccggt 1883644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 1365757 - 1365798
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaac 169  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  1365757 tcagttggtatcagagcaggtttctcctgttcttttcctaac 1365798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 859314 - 859248
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||| |||||||||||||||||||| |||||||  |||||||  || |||||||||| ||||||||    
T  859314 atatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgctt 859248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 1217318 - 1217252
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||| |||||||||||||||||||| |||||||  |||||||  || |||||||||| ||||||||    
T  1217318 atatttgagacttttctctcaattctggtggattccggaaacctttattttgataggtttgtcgctt 1217252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 5678368 - 5678248
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgctt 103  Q
    ||||||||||||||||||||||||| ||| | | ||  ||||| |||||||||||| ||||||||  || || | || |||||||||| | ||||  |||    
T  5678368 tattcgagacttttctctcaattctggtgta-tatgtgaacccttatttgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttagtactt 5678270  T
Q  104 gttaactcttgcttccgttctg 125  Q
    | |||| ||||||||| |||||    
T  5678269 gctaacccttgcttccattctg 5678248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 5703420 - 5703300
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgctt 103  Q
    ||||||||||||||||||||||||| ||| | | ||  ||||| |||||||||||| ||||||||  || || | || |||||||||| | ||||  |||    
T  5703420 tattcgagacttttctctcaattctggtgta-tatgtgaacccttatttgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttagtactt 5703322  T
Q  104 gttaactcttgcttccgttctg 125  Q
    | |||| ||||||||| |||||    
T  5703321 gctaacccttgcttccattctg 5703300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 24840223 - 24840312
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaac 217  Q
    ||||||||||||||| |   |||||||| |||||||||||||| ||||  ||||| |||||||||  ||||  ||||||| | |||||||    
T  24840223 tcagttggtatcagagcggatttctcctattcttttcctaacgtgatcggccatgagagatcaacatgtgatgaaaatcgtggctttaac 24840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 4303383 - 4303498
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctg-tcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    ||||||||| |||||||||||||||||||||||  | |||||| ||||| |||||| || |||||| ||| || | |  |||||||||| | ||||||||    
T  4303383 tattcgaga-ttttctctcaattctagtggattccgaaaacccttatttaataggtttgttcgcttgcaacctgtctctttatcttttaggtttagcgct 4303481  T
Q  103 tgttaactcttgcttcc 119  Q
    |  |||| |||||||||    
T  4303482 tactaacccttgcttcc 4303498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 13886343 - 13886280
Alignment:
Q  6 attcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||| ||||||||||||| | ||||||| ||||||||| || |||||||||| ||||||||    
T  13886343 attcgaga-ttttctctcaattatggtggattctggaaacccttattttgataggtttgtcgctt 13886280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 4580494 - 4580613
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    |||||||||| ||||||||||||||||||||||| || |||||| |||||||||||| |||||||| ||| || | || |||||||||| | ||||||||    
T  4580494 atattcgagaattttctctcaattctagtggattctgaaaacccttatttgataggtttgtcgcttgcaacctgtgtgtttatcttttaggtttagcgct 4580593  T
Q  103 tgttaactcttgcttccgtt 122  Q
    || |||| |||| |||||||    
T  4580594 tgctaacccttgtttccgtt 4580613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 20398557 - 20398430
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    ||||||||||||||| |||||||||| |||||||  | |||||| ||||||||||   |||||||| ||| || | || |||||||||| | ||||||||    
T  20398557 atattcgagacttttttctcaattctggtggattccgaaaacccttatttgatagacttgtcgcttgcaacctgtctgattatcttttaggtttagcgct 20398458  T
Q  103 tgttaactcttgcttccgttctggatca 130  Q
    || ||| |||||||||||||||| ||||    
T  20398457 tgctaattcttgcttccgttctgcatca 20398430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 43306688 - 43306611
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    |||||||| |||  ||||||||||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||    
T  43306688 gcttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaacg-gatcagccatgggagatcaac 43306611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 41218735 - 41218804
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaa 73  Q
    |||||||||||||||||||||||||| |||||||  ||||| || |||||||||||| ||||||||||||    
T  41218735 atattcgagacttttctctcaattctggtggattccggaaagccttatttgataggtttgtcgcttacaa 41218804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 3068891 - 3068813
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    |||||||| |||  ||||||||||| ||| ||||||||||||||||| ||||||||  ||| | |||||||||||||||    
T  3068891 gcttccgtactgcgtcagttggtattagagcatgtttctcctgttctcttcctaacatgataagccatgggagatcaac 3068813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 39913386 - 39913264
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatctttt-atgttagcgct 102  Q
    |||||||||||||||||| ||||||| |||||||  |||  ||  |||||||||||| |||| |||||||| | | || ||||||||| |  |||| |||    
T  39913386 atattcgagacttttctcccaattctggtggattccggacccctctatttgataggtttgtcacttacaatatatgtgtttatcttttaaatttagtgct 39913287  T
Q  103 tgttaactcttgcttccgttctg 125  Q
    |  ||||||||||||||||||||    
T  39913286 tcctaactcttgcttccgttctg 39913264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 43304118 - 43304052
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| |||||||| |||||||| || ||| |||||| ||||||||    
T  43304118 atattcgagacttttctctcaattctggtggatttcggaaacccttattttaataggtttgtcgctt 43304052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 53012957 - 53013023
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  53012957 atattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 53013023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 43306830 - 43306764
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||| ||||||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  43306830 atattcaagacttttctctcaattctggtggattacggaaacccttattttgataggtttgtcgctt 43306764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33620160 - 33620108
Alignment:
Q  8 tcgagacttttctctcaattctagtggattttggaaacccgtatttgataggt 60  Q
    |||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||    
T  33620160 tcgagatttttctctcaattctggaggattctggaaacccttatttgataggt 33620108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 3063895 - 3063829
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| || ||||  | |||||| || |||||||||| ||||||||    
T  3063895 atattcgagacttttctctcaattctggttgattccgaaaacccttattttgataggtttgtcgctt 3063829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 3069033 - 3068967
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||| ||||||||||||||| | |||||||  |||||||| || |||||||||| ||||||||    
T  3069033 atattcgatacttttctctcaattttggtggattccggaaacccttattttgataggtttgtcgctt 3068967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 19949934 - 19950052
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    ||||| ||||||||||||||||||||  ||||||    |||||| ||||||||| || |||||||| |||  | | || |||||||||| | ||||||||    
T  19949934 atattagagacttttctctcaattctgatggattccaaaaacccttatttgataagtttgtcgcttgcaacttatctgtttatcttttaggtttagcgct 19950033  T
Q  103 tgttaactcttgcttccgt 121  Q
    || |||| |||| ||||||    
T  19950034 tgctaacccttgtttccgt 19950052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5128842 - 5128906
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||| ||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  5128842 tattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 5128906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 25857723 - 25857772
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtattt 53  Q
    ||||| |||||||||||||||||| | |||||||| |||||||| |||||    
T  25857723 atatttgagacttttctctcaattgtggtggatttcggaaacccttattt 25857772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 368873 - 368805
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    ||||||| ||||||| || |||||||||  |||||| |||||| ||||| ||||||||||||||||| ||||    
T  368873 tcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaaccgatgac 368805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 40593598 - 40593535
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgctt 69  Q
    ||||||||| ||||||||||||| | |||||||  | |||||| |||||||||||| ||||||||    
T  40593598 tattcgaga-ttttctctcaattttggtggattccgaaaacccttatttgataggtttgtcgctt 40593535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 18180839 - 18180651
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtattt-gataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgct 102  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| |||||||| |||  | |  | ||||| |||| ||| ||||||    
T  18180839 tattcgaga-ttttctctcaattctggtggattctggaaacccttattttgataggtttgtcgcttgcaacatgtcagtttatcctttaggtttagcgct 18180741  T
Q  103 tgttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    || || |    |||||||| |||  ||||||||||||| | || |||||||||||||||||||||||  ||||| |||||||||||||||    
T  18180740 tgctagcctacgcttccgtactgcgtcagttggtatcaaagcaggtttctcctgttcttttcctaacatgatcagccatgggagatcaac 18180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 33071806 - 33071741
Alignment:
Q  236 gggcggatctttgttgagacccccagatgccatggcatcccccaagattgttatatatatgatatt 301  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  33071806 gggcggatctctgttgagacccccaggtgccatggcatcccccaatattgttatatatatgatatt 33071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 22512061 - 22511981
Alignment:
Q  115 cttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    ||||||| |||  ||||||||||||||| || |||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  22512061 cttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaatg-gatcagccatgggagatcaaccggt 22511981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 22519361 - 22519281
Alignment:
Q  115 cttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    ||||||| |||  ||||||||||||||| || |||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  22519361 cttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaatg-gatcagccatgggagatcaaccggt 22519281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 2687827 - 2687899
Alignment:
Q  127 atcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    ||||| |||||||||| || |||||||||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  2687827 atcaggtggtatcagagcaggtttctcctgttcttttcataacgtgatcaaccatggaagatcaactggtgac 2687899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 26374985 - 26375050
Alignment:
Q  127 atcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    |||||||||||||||| || ||||||||| |||||||||||||  ||||| |||||||||||||||    
T  26374985 atcagttggtatcagagcaggtttctcctattcttttcctaacatgatcacccatgggagatcaac 26375050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 42890477 - 42890540
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    ||||||||||||||| || |||||||||||||||||||||||  ||||| |||||||||||||||    
T  42890477 tcagttggtatcagagcaggtttctcctgttcttttcctaac-agatcagccatgggagatcaac 42890540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 37189939 - 37190018
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaacc 193  Q
    |||||||| |||  ||| ||||||||||| ||  ||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  37189939 gcttccgtactgcgtcaattggtatcagagcagatttcttctgttcttttcctaacgtgatcagccatgggagatcaacc 37190018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 23570515 - 23570581
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||| ||||||||    
T  23570515 atattcgagacttttctctcaattctggtgcattctggaaacccttattttgataggtttgtcgctt 23570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 16598303 - 16598407
Alignment:
Q  95 ttagcgcttgttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccg 194  Q
    |||||||||| ||||  ||||||||||| |   | ||||||||| |||  | ||||||||||| |||||||||||  || || |||||||||||||||||    
T  16598303 ttagcgcttgctaaccattgcttccgttttacgttagttggtattagagtaggtttctcctgtccttttcctaacttgagcatccatgggagatcaaccg 16598402  T
Q  195 gtgac 199  Q
    |||||    
T  16598403 gtgac 16598407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 15081518 - 15081624
Alignment:
Q  20 tctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgcttgttaactcttgcttc 118  Q
    |||||||||| ||||||| ||||||||  ||||||| |||| |||||||| |||  | | || |||||| ||||||| |||| |||||||  ||||||||    
T  15081518 tctcaattcttgtggattctggaaacctttatttgacaggtttgtcgcttgcaacttgtgtgtttatctcttatgtttagcgtttgttaatccttgcttc 15081617  T
Q  119 cgttctg 125  Q
    |||||||    
T  15081618 cgttctg 15081624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 23573514 - 23573580
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||||||||||||||||||   |||||||| |||||||| || |||||||||| ||||||||    
T  23573514 atattcgagacttttctctcaatttaggtggatttcggaaacccttattttgataggtttgtcgctt 23573580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 26150621 - 26150661
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaa 44  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  26150621 atattcgagacttttctctcaattctggtggattctggaaa 26150661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 16977971 - 16978030
Alignment:
Q  236 gggcggatctttgttgagacccccagatgccatggcatcccccaagattgttatatatat 295  Q
    |||||||||| | | |||||||  || ||||||||||||||||||||||| |||||||||    
T  16977971 gggcggatctctttggagacccataggtgccatggcatcccccaagattgctatatatat 16978030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 2189738 - 2189689
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttctttt 163  Q
    |||||||| |||  ||||||||||||||| |||||||||| |||||||||    
T  2189738 gcttccgtactgcgtcagttggtatcagagcatgtttctcatgttctttt 2189689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 22512202 - 22512142
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtc 65  Q
    ||||||||| ||||||||||||||| |||||||| |||||||| || |||||||||| ||||    
T  22512202 tattcgaga-ttttctctcaattctggtggatttcggaaacccttattttgataggtttgtc 22512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 22922006 - 22921942
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    ||||||||| ||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  22922006 tattcgaga-ttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 22921942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 6655564 - 6655630
Alignment:
Q  235 tgggcggatctttgttgagacccccagatgccatggcatcccccaagattgttatatatatgatatt 301  Q
    ||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  6655564 tgggcggatctctgttgagacccccaggtgccatggcttctcccaagattgttatatatatgatatt 6655630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 19497339 - 19497240
Alignment:
Q  95 ttagcgcttgttaactcttgcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccg 194  Q
    |||||||||| |||  ||| ||||||| | |  ||||||| ||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19497339 ttagcgcttgctaatccttacttccgtaccgcgtcagttgatatcagagcaggtttctcctgttcttttcctaacgtgatccaccatgggagatcaaccg 19497240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 19677288 - 19677169
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgct 102  Q
    |||||||||||||||||||||||||| |||||||  | |||||| ||||||| |||| |||||||| ||| || | || |||||||||| | ||||||||    
T  19677288 atattcgagacttttctctcaattctggtggattccgaaaacccttatttgaaaggtttgtcgcttgcaacctatctgtttatcttttaggcttagcgct 19677189  T
Q  103 tgttaactcttgcttccgtt 122  Q
    || |||  ||||||||||||    
T  19677188 tgctaatccttgcttccgtt 19677169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 21848981 - 21848899
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    |||||||| |||  || |||||||||||| || |||||||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  21848981 gcttccgtactgcgtcggttggtatcagagcaggtttctcctgttttttccctaacgtgatcagccatgggagatcaaccggt 21848899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 9868400 - 9868334
Alignment:
Q  132 ttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgac 199  Q
    ||||||||||| || |||| |||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  9868400 ttggtatcagagcaggttt-tcctgttctttttctaacgtgatcagccatgggagatcaaccggtgac 9868334  T

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Target: scaffold0240 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 16131 - 16223
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaactgc 220  Q
    ||||||||||||||| || |||||||| ||||||||||||| | ||||| ||||| |||||||||| ||||| ||||||| | ||||||||||    
T  16131 tcagttggtatcagagcaggtttctccagttcttttcctaatgtgatcagccatgagagatcaaccagtgacaaaaatcgtggctttaactgc 16223  T

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Target: scaffold0240; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 1747 - 1837
Alignment:
Q  130 agttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaactgcg 221  Q
    |||||||||||||  | ||||||||| |||||||||||||| ||||| ||| ||||||||||  |||||| ||||| ||| |||||||||||    
T  1747 agttggtatcagagtaagtttctcctattcttttcctaacgtgatcagcca-gggagatcaataggtgacaaaaattgcggctttaactgcg 1837  T

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Target: scaffold0240; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 14932 - 14973
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaac 169  Q
    ||||||||||||||| || |||||||| ||||||||||||||    
T  14932 tcagttggtatcagagcaggtttctcccgttcttttcctaac 14973  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 27956170 - 27956093
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    |||||||| |||  ||||||||||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||    
T  27956170 gcttccgtactgcgtcagttggtatcagagcaggtttctcctgttcttttcctaacg-gatcagccatgggagatcaac 27956093  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 33051705 - 33051769
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    ||||||||||||||| || |||||||||||||||||||||||| ||||| ||||| |||||||||    
T  33051705 tcagttggtatcagagcaggtttctcctgttcttttcctaacgtgatcagccatgagagatcaac 33051769  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 32163774 - 32163710
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    ||||||||||| ||| ||| ||||| || |||||||||||||| |||||||||||||||||||||    
T  32163774 tcagttggtattagagcatatttcttctattcttttcctaacgtgatcaaccatgggagatcaac 32163710  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22011367 - 22011433
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgctt 69  Q
    |||||||||||||||||||||||||| |||||||  |||||||| || |||||||||| ||||||||    
T  22011367 atattcgagacttttctctcaattctggtggattccggaaacccttattttgataggtttgtcgctt 22011433  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 8781447 - 8781558
Alignment:
Q  5 tattcgagacttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatg-ttagcgctt 103  Q
    ||||||||| ||| ||||||||||| |||||||| | |||||| |||||||||||| |||||||| ||| || | || |||||||||| | |||||||||    
T  8781447 tattcgaga-tttactctcaattctggtggatttcg-aaacccttatttgataggtttgtcgcttgcaacctgtctgtttatcttttaggtttagcgctt 8781544  T
Q  104 gttaactcttgctt 117  Q
     ||||| |||||||    
T  8781545 tttaacccttgctt 8781558  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 23456639 - 23456704
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaacc 193  Q
    ||||||||||||||| || ||||||  |||||||||||||||| ||||| ||||| ||||||||||    
T  23456639 tcagttggtatcagagcaagtttcttttgttcttttcctaacgtgatcagccatgagagatcaacc 23456704  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 31634177 - 31634254
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaa 191  Q
    |||||||| |||  ||||||||||||| | || ||||||||||||||||||||| |  ||||||| ||||||||||||    
T  31634177 gcttccgtactgcgtcagttggtatcatagcaggtttctcctgttcttttcctagcatgatcaactatgggagatcaa 31634254  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 44675368 - 44675287
Alignment:
Q  15 ttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgtt 96  Q
    ||||||||||||||| |||||||  | |||||| |||||||||||| |||||||| ||| || | || ||||||||||||||    
T  44675368 ttttctctcaattctggtggattccgaaaacccttatttgataggtatgtcgcttgcaacctgtctgtttatcttttatgtt 44675287  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 18725742 - 18725629
Alignment:
Q  13 acttttctctcaattctagtggattttggaaacccgtatttgataggtctgtcgcttacaatctttttgcttatcttttatgtt-agcgcttgttaactc 111  Q
    |||||||||| |||| ||||||| |   ||||||  |||||||||||| |||||||| ||  || | || |||||||||| ||| |||| |||||||| |    
T  18725742 acttttctcttaattttagtggaatccagaaacctttatttgataggtttgtcgcttgcagcctgtctgtttatcttttaagtttagcgtttgttaaccc 18725643  T
Q  112 ttgcttccgttctg 125  Q
    ||||||||||||||    
T  18725642 ttgcttccgttctg 18725629  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 28737991 - 28738054
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaa 191  Q
    ||||||||||||||| ||  |||||| ||| |||||||||||  ||||| ||||||||||||||    
T  28737991 tcagttggtatcagagcagatttctcttgtgcttttcctaacatgatcagccatgggagatcaa 28738054  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 36647365 - 36647414
Alignment:
Q  114 gcttccgttctggatcagttggtatcagatcatgtttctcctgttctttt 163  Q
    |||||||| |||  ||||||||||||||| |||||||||| |||||||||    
T  36647365 gcttccgtactgcgtcagttggtatcagagcatgtttctcatgttctttt 36647414  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 2155898 - 2155970
Alignment:
Q  4 atattcgagacttttctctcaattctagtggattttggaaacccgta-tttgataggtctgtcgcttacaatc 75  Q
    |||||| |||||||||||||||||||  ||||||  | |||||| || |||||||||| |||||||| |||||    
T  2155898 atattcaagacttttctctcaattctgatggattccgaaaacccttattttgataggtttgtcgcttgcaatc 2155970  T

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Target: scaffold0531 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 11591 - 11527
Alignment:
Q  128 tcagttggtatcagatcatg-tttctcctgttcttttcctaacgcgatcaaccatgggagatcaac 192  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  11591 tcagttggtatcagagcatggtttctcctgttcttttcctaacg-gattagccatgggagatcaac 11527  T

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Target: scaffold0330 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 17729 - 17819
Alignment:
Q  130 agttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggtgactaaaatcgcgactttaactgcg 221  Q
    |||||||||||||  | |||||| || |||||||||||||| ||||| ||| ||||||||||  |||||| ||||| ||| |||||||||||    
T  17729 agttggtatcagagtaagtttctactattcttttcctaacgtgatcagcca-gggagatcaataggtgacaaaaattgcggctttaactgcg 17819  T

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Target: scaffold0090 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 15081 - 15013
Alignment:
Q  128 tcagttggtatcagatcatgtttctcctgttcttttcctaacgcgatcaaccatgggagatcaaccggt 196  Q
    ||||||| ||||||| || ||||||  ||||||||| |||||  ||||| |||||||||||||||||||    
T  15081 tcagttgatatcagagcaggtttcttgtgttcttttactaacttgatcagccatgggagatcaaccggt 15013  T

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