View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2508_high_8 (Length: 288)
Name: NF2508_high_8
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2508_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 23158558 - 23158285
Alignment:
| Q |
1 |
ctcaacagtaaaaatattaaaacgtagcgaagttatttacctccgtaactaatattttggaaacacaaataagttttgaatccttacttagaatcggaca |
100 |
Q |
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||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23158558 |
ctcaacactaaagaaattaaaacgtagcgaagttatttacctccgtaactaatattttggaaacacaaataagtattgaatccttacttagaatcggaca |
23158459 |
T |
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| Q |
101 |
cttcaattccaatacccattattcactgattgttctgtattgacagaataatgataccgcaatttcgaagagatataaaatttatcgatgaaagaaaaat |
200 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
23158458 |
cttcgattccaatacccattattcactgatttttctgtattgacagaataatgatacaacaatttcggagagatataaaatttatcgatgaaagaaaaat |
23158359 |
T |
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| Q |
201 |
tgctaatgaaaattgttagaa-taatgaatgtttgtagcaat--tgtgtttgtgaaatcagatagtgggaagta |
271 |
Q |
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| T |
23158358 |
tgctaatgaaaattgctagaattattgaatgtttgtagcaattatgtgtttgtgaaatcagatagtgggaagta |
23158285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 18763568 - 18763301
Alignment:
| Q |
1 |
ctcaacagtaaaaatattaaaacgtagcgaagttatttacctccgtaactaatattttggaaacacaaataagttttgaatccttacttagaatcggaca |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18763568 |
ctcaacagtaaagaaattaaaacgtagcgaagttatttacctccgtaactaatattttggaaacacaaataagttttgaatccttacttagaatcggaca |
18763469 |
T |
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| Q |
101 |
cttcaattccaatacccattattcactgattgttctgtattgacagaataatgataccgcaatttcgaagagatataaaatttatcgatgaaagaaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18763468 |
cttcaattccaatacccattattcactgatttttctgtattgacagaataatgataccgcaatttcgaagagatataaaatttatcgatgaaagaaaaat |
18763369 |
T |
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| Q |
201 |
tgctaatgaaaattgttagaataatgaatgtttgtagcaat--tgtgtttgtgaaatcagatagtgggaagtagttgatga |
279 |
Q |
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| T |
18763368 |
tgc-------------tagaataatgaatgtttgtagcaattatgtgtttgtgaaatcaggtagtgggaagtagttaatga |
18763301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 20014985 - 20014886
Alignment:
| Q |
183 |
tatcgatgaaagaaaaattgctaatgaaaattgttagaa-taatgaatgtttgtagcaat--tgtgtttgtgaaatcagatagtgggaagtagttgatga |
279 |
Q |
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|||| ||||||||||||||| |||||||||||| || || |||||||||||||||||||| ||||||| |||||||||||| || ||||||||| |||| |
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| T |
20014985 |
tatctatgaaagaaaaattgttaatgaaaattgctacaattaatgaatgtttgtagcaattatgtgtttatgaaatcagataatgagaagtagttaatga |
20014886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 37014070 - 37013980
Alignment:
| Q |
193 |
agaaaaattgctaatgaaaattgttagaat-aatgaatgtttgtagcaattgtgt--ttgtgaaatcagatagtgggaagtagttgatgat |
280 |
Q |
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|||||||||| | |||||||||| |||||| ||||| ||||||| |||||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
37014070 |
agaaaaattgttgatgaaaattggtagaatcaatgattgtttgtggcaattgtgtgtttatgaaatcagattgtgggaagtagttaatgat |
37013980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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