View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_low_13 (Length: 221)

Name: NF2508_low_13
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2508_low_13
NF2508_low_13
[»] chr5 (2 HSPs)
chr5 (16-200)||(25614660-25614845)
chr5 (110-188)||(31262760-31262838)
[»] scaffold1377 (1 HSPs)
scaffold1377 (111-190)||(1090-1169)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 25614845 - 25614660
Alignment:
Q  16 atggatcatcaaaattaaaccaagataactcacaaataaaatttatataatttctagtggtataaaataccaactttccagacaatnnnnnnn-ctaaaa 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||    
T  25614845 atggatcatcaaaattaaaccaagacaactcacaaataaaatttatataatttctagtagtataaaataccaactttccagacaatagagaaaactaaaa 25614746  T
Q  115 gtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25614745 gtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccattatacttatc 25614660  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 31262838 - 31262760
Alignment:
Q  110 taaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacacc 188  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  31262838 taaaggtaaaagcatcgaaacagaatttttatcaatccacaattgcagtctaccctaaaattcattcatactaaacacc 31262760  T

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Target: scaffold1377 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 1090 - 1169
Alignment:
Q  111 aaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcattcatactaaacaccat 190  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||  |||  |||||||| |||||    
T  1090 aaaaataaaagcatccaaaccgaattgttatcaatccacaattgtagtccatcctagaatacatcaatactaaagaccat 1169  T

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