View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_low_14 (Length: 202)

Name: NF2508_low_14

Description: NF2508

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2508_low_14

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 22 - 188

Target Start/End: Original strand, 38592654 - 38592820

Alignment:

Q	22	gaacagaacaagccaaaaataagagacttatgaatagaattaccactagcattaagcttaaggaagtaaaggaaaattctgagatatcttcaaaatgaaa	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38592654	gaacagaacaagccaaaaataagagacttatgaatagaattaccactagcattaagcttaaggaagtaaaggaaaattctgagatatcttcaaaatgaaa	38592753	T

Q	122	gtaaaccctagtttcctatttctgtactctttcttttcttctacaagttgaagcaatgatgaaaaat	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38592754	gtaaaccctagtttcctatttctgtactcttttttttcttctacaagttgaagcaatgatgaaaaat	38592820	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 35 - 99

Target Start/End: Original strand, 38592442 - 38592506

Alignment:

Q	35	caaaaataagagacttatgaatagaattaccactagcattaagcttaaggaagtaaaggaaaatt	99	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	38592442	caaaaataagagacttataaatagaaataccactagcattaagctaattgaagtaaaagaaaatt	38592506	T

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