View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2508_low_3 (Length: 370)
Name: NF2508_low_3
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2508_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 44780820 - 44781156
Alignment:
| Q |
9 |
acatcatcaccttgaaagtcgactaatttgatatgattttttggtagatgaaaaatgtgtaaaatctcgatgcaagagaggcaaagcttggaatgatgga |
108 |
Q |
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| T |
44780820 |
acatgatcaccttgaaagtcgactaatttgatatgattttttggtagatgaaaaatgtgtaaaatctcgatgcaagagaggcaaagcttggaatgatgga |
44780919 |
T |
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| Q |
109 |
aaagagaatgaagatagttacaaaatccaaaggctttgctttggggacaagaagccaaaattatatggctaaggtccccccacttgatttaacacaatca |
208 |
Q |
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| T |
44780920 |
aaagagaatgaagatagttacaaaatccaaaggctttgctttggggacaagaagccaaaattatatggctaaggtccccccacttgatttaacacaatca |
44781019 |
T |
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| Q |
209 |
cactaaatgaccagccttggtcggtcacttgaaatgctaatgggtccctatttgatcaattttgagaacgaaataaagaagaatgttatactcattcact |
308 |
Q |
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| T |
44781020 |
cactaaatgaccagccttggtcggtcacttgaaatgctaatgggtccctatttgatcaattttgagaacgaaataaagaagaatgttat--------act |
44781111 |
T |
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| Q |
309 |
cattcttcattaaaaggctcaactgtacagtttaatacacctttt |
353 |
Q |
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| T |
44781112 |
cattcttcattaaaaggctcaactgtacagtttaatacacctttt |
44781156 |
T |
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