View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2508_low_5 (Length: 319)

Name: NF2508_low_5
Description: NF2508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2508_low_5
NF2508_low_5
[»] chr6 (2 HSPs)
chr6 (134-306)||(21481663-21481839)
chr6 (1-38)||(21481527-21481564)
[»] chr2 (3 HSPs)
chr2 (134-312)||(26661746-26661926)
chr2 (1-38)||(26661609-26661646)
chr2 (1-30)||(6050014-6050043)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-38)||(9694-9731)
[»] chr8 (2 HSPs)
chr8 (1-38)||(10637749-10637786)
chr8 (1-38)||(32717808-32717845)
[»] chr4 (1 HSPs)
chr4 (1-30)||(13893697-13893726)
[»] chr1 (1 HSPs)
chr1 (1-38)||(22893904-22893941)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 134 - 306
Target Start/End: Original strand, 21481663 - 21481839
Alignment:
Q  134 ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taactttt 229  Q
    |||||||||||||||||||||||||| || ||||||||||||||||        | |||||||||||||||||||||||||||||||||   ||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  230 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 21481839  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21481527 - 21481564
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21481527 tactcaacatagatttggtgattgatatcaattctctg 21481564  T

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Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 312
Target Start/End: Original strand, 26661746 - 26661926
Alignment:
Q  134 ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttc 230  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||| ||||||||   ||||||||     
T  26661746 ccactgtttggcaattcttgttttttcccaatcatgaatcaatg-aaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  231 ccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagtctgtg 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtg 26661926  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26661609 - 26661646
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26661609 tactcaacatagatttggtgattgatatcaattctctg 26661646  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6050014 - 6050043
Alignment:
Q  1 tactcaacatagatttggtgattgatatca 30  Q
    ||||||||||||||||||||||||||||||    
T  6050014 tactcaacatagatttggtgattgatatca 6050043  T

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Target: scaffold0586 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9694 - 9731
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  9694 tactcaacatagatttggtgatttatatcatttctctg 9731  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10637749 - 10637786
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  10637749 tactcaacatagatttggtgatttatatcatttctctg 10637786  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32717845 - 32717808
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  32717845 tactcaacatagatttggtgatttatatcatttctctg 32717808  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13893726 - 13893697
Alignment:
Q  1 tactcaacatagatttggtgattgatatca 30  Q
    ||||||||||||||||||||||||||||||    
T  13893726 tactcaacatagatttggtgattgatatca 13893697  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22893904 - 22893941
Alignment:
Q  1 tactcaacatagatttggtgattgatatcaattctctg 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  22893904 tactcaacatagatttggtgatttatatcatttctctg 22893941  T

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